Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31]
676 sequences; 36,468,289 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq37 170 2e-37
seq643 147 3e-30
>seq37
Length=309367
Score = 170 bits (188), Expect = 2e-37
Identities = 556/857 (65%), Gaps = 24/857 (3%)
Strand=Plus/Plus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
|| ||||| ||| | || || || ||||| || || ||||| || | | || || ||
Sbjct 135285 TTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTTTTGCCGCCAAGGGAGATGTTC 135344
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
|||||||| || || || ||||| ||||| | || | || | || |
Sbjct 135345 TCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGG 135404
Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470
| | ||| ||||||||||| || || ||||| | | | ||||| || | ||
Sbjct 135405 AGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGG 135464
Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530
| || |||||| |||||||||| || || ||||| || || |||| || |||||
Sbjct 135465 GCACAAGGGAGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATG 135524
Query 33531 A-----ATCTAACGGTTTCTT--CAC-TCGGTGGATGTAATAAATGTTTAAACATCAAAC 33582
||| | | |||| | ||| || | || || | | | | | ||
Sbjct 135525 TCCTGGATC-ATCTGTTTGCTGGCACGTCCCTTGAGGTGAGAGTGG-------AGGAGAC 135576
Query 33583 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTC 33642
| || || ||| ||| |||||||| || | | ||| | ||||||||||| | || |
Sbjct 135577 AGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGAC 135636
Query 33643 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGA 33702
| ||||| ||||||||||| || ||||| || |||||||| || | ||| |||||||
Sbjct 135637 CAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGA 135696
Query 33703 TTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTA 33759
| || || || |||||||| |||| ||| | || || | | | | || || |
Sbjct 135697 TACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGTAGAGTTCTTATCCTGGA 135756
Query 33760 TCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
|||| | || |||||||| ||||||||| | ||||| || || || | ||| ||
Sbjct 135757 TCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTG 135815
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
||||| || | | | || || | || |||||||| | || || ||
Sbjct 135816 AAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTT 135875
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| || || ||||| || || ||||| || || ||||| |||| |||||||| |||
Sbjct 135876 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATC 135935
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| || || | ||||| || | | ||| ||||| || || || || ||| ||
Sbjct 135936 TGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAGCG 135995
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT---TAGTTTATTCCAA 34055
|| || || | | || || || |||| ||||||| || | | || |||||
Sbjct 135996 AAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCCAG 136055
Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115
|| | || ||| || || | ||| | || || ||||||| || || |||||||||||
Sbjct 136056 TCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTC 136115
Query 34116 TTATACATATTCCAGAT 34132
|| ||||| | ||||||
Sbjct 136116 TTGTACATTTGCCAGAT 136132
>seq643
Length=117438
Score = 147 bits (162), Expect = 3e-30
Identities = 452/694 (65%), Gaps = 4/694 (1%)
Strand=Plus/Minus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| ||||| | || ||||| | | ||| || |||| || || || ||||| ||
Sbjct 47725 AGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAA 47666
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
|||||||| ||||||||||||| || || || | | | ||||| || ||
Sbjct 47665 AAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTG 47606
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||||| ||||| |||||| | | | || | ||||| || || | ||| |||||
Sbjct 47605 ATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGC 47546
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | ||||| || ||||| || ||||| || | ||| | ||| ||||| || | ||
Sbjct 47545 GAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACAC 47486
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
| || ||| |||| |||||||| || ||||||||||||||| ||| || ||| |
Sbjct 47485 ACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT 47426
Query 63521 GGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579
|||||| || | | | | | || || || || ||||| || || || | || |
Sbjct 47425 GGCACGGAT-TCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCAC 47367
Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639
| || | || || ||||| || || ||||| || || |||| | || || || |
Sbjct 47366 AAGTCTTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 47307
Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699
| || | || | | | ||| || || || ||||| || || || || || |
Sbjct 47306 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 47247
Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63758
| | || || | || ||||| ||||| | | || ||||| || |
Sbjct 47246 AGAACTTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG- 47188
Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818
||||| || ||||| ||||| | ||| ||||| || | ||| |||||||| || ||
Sbjct 47187 ATTCCAACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATC 47128
Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878
| | |||||| ||| | ||| ||| || |||||||||||||| ||||| ||
Sbjct 47127 TGTAGCAAGTATGATCTGGACAAGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGA 47068
Query 63879 TCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912
|| || | ||| | || | ||| | || ||||
Sbjct 47067 TCATAGACAATCGCTGAGTCGAGTTCCTCTTTAT 47034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629812278041280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |