Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq37 170 2e-37 seq643 158 2e-33 >seq37 Length=309367 Score = 170 bits (188), Expect = 2e-37 Identities = 556/857 (65%), Gaps = 24/857 (3%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || ||||| ||| | || || || ||||| || || ||||| || | | || || || Sbjct 135285 TTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTTTTGCCGCCAAGGGAGATGTTC 135344 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 |||||||| || || || ||||| || || | || | || | || | Sbjct 135345 TCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGG 135404 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 | | ||| ||||||||||| || || ||||| | | | ||||| || | || Sbjct 135405 AGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGG 135464 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | || |||||| |||||||||| || || ||||| || || ||||| || ||||| Sbjct 135465 GCACAAGGGAGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATG 135524 Query 33253 -----GATCTAACGGTTTCTT--CAC-TCGGTGGATGCAATAAATGTTTAAACATCAAAC 33304 |||| | | |||| | ||| || | || | | | | | | || Sbjct 135525 TCCTGGATC-ATCTGTTTGCTGGCACGTCCCTTGAGGTGAGAGTGG-------AGGAGAC 135576 Query 33305 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 33364 | || || ||| ||| |||||||| || | | ||| || ||||| ||||| | || | Sbjct 135577 AGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGAC 135636 Query 33365 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGA 33424 | ||||| ||||||||||| || ||||| || |||||||| || | || ||||||| Sbjct 135637 CAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGA 135696 Query 33425 TTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTA 33481 | || || || |||||||| |||| ||| | || || | | | | || || | Sbjct 135697 TACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGTAGAGTTCTTATCCTGGA 135756 Query 33482 TCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||| | || |||||||| ||||||||| | ||||| || || || | ||| || Sbjct 135757 TCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTG 135815 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| || | | | || || | || |||||||| | || || || Sbjct 135816 AAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTT 135875 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| || || ||||| || || ||||| |||| |||||||| ||| Sbjct 135876 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATC 135935 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | ||||| || | | ||| ||||| || || ||||| ||| || Sbjct 135936 TGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAGCG 135995 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT---TAGTTTATTCCAA 33777 || || || | | || || || |||| ||||||| || | | || ||||| Sbjct 135996 AAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCCAG 136055 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 || | || ||| || || | ||| | || || ||||||| || || ||||||||||| Sbjct 136056 TCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTC 136115 Query 33838 TTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 136116 TTGTACATTTGCCAGAT 136132 >seq643 Length=117438 Score = 158 bits (174), Expect = 2e-33 Identities = 628/973 (65%), Gaps = 18/973 (2%) Strand=Plus/Minus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62956 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 47997 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 47939 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 || || | ||| || || | || | ||| |||||||| || || ||| Sbjct 47938 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 47879 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 ||| || || ||||| || | || || || |||| | || | ||| || | ||| | Sbjct 47878 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 47820 Query 63077 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTT----TCTCTTTCGTATAGTGTATAC 63131 | || ||||||| || ||| ||| | |||| ||||| ||||| | ||| Sbjct 47819 GCTTCTGAGCCTTGAT---AGACTTGCGAC-CCTTACCCTCTCTCTCGTACTTTTCGTAC 47764 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACAT 63190 | || || ||||| || | || | ||| ||||| ||||| | || ||||| Sbjct 47763 AGAGCCTCAAATTCGTCACCGTAG-CAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACAT 47705 Query 63191 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63250 | | ||| || |||| || || || ||||| || |||||||| ||||||||||| Sbjct 47704 GAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 47645 Query 63251 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310 || || || || | | | ||||| || || ||||||| ||||| ||||| Sbjct 47644 TAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 47585 Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370 | | | | || | ||||| || || | ||| ||||| | | ||||| || ||||| Sbjct 47584 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 47525 Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 || ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| Sbjct 47524 ACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACC 47465 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 ||| || ||||||||||||||| ||| || ||| ||||||| || | | | Sbjct 47464 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 47406 Query 63491 T-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549 | | || || || || ||||| || || || | || || || | || || |||| Sbjct 47405 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 47346 Query 63550 TACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63609 |||| || ||||| || || |||| | || || || || || | || | | Sbjct 47345 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTG 47286 Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669 ||| || || || ||||| || || || || || || | || || | || | Sbjct 47285 GAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGT 47226 Query 63670 TGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATT 63728 |||| ||||| | | || ||||| || | ||||| || ||||| ||||| Sbjct 47225 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATG 47167 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 | ||| ||||| || | ||| | || ||| || || | | |||||| ||| | | Sbjct 47166 ATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGAC 47107 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63848 || ||| || |||||||||||||| ||||| || || || | ||| | |||| | Sbjct 47106 AAGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCG 47047 Query 63849 AGTTTATCCTTAT 63861 |||| || |||| Sbjct 47046 AGTTCCTCTTTAT 47034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941936096160