Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq643 163 4e-35 seq37 147 3e-30 >seq643 Length=117438 Score = 163 bits (180), Expect = 4e-35 Identities = 626/971 (64%), Gaps = 14/971 (1%) Strand=Plus/Minus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62811 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 47997 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 47939 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 || || | |||||| || | || | ||| |||||||| || || ||| Sbjct 47938 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 47879 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 ||| || || ||||| || | || || || |||| | || | ||| || | ||| | Sbjct 47878 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 47820 Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACA 62987 | || ||||||| || ||| ||| | ||| ||||| ||||| | |||| Sbjct 47819 GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 47763 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047 || || ||||| || | | | || ||||| ||||| | || ||||| | Sbjct 47762 GAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGA 47703 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 | ||| || |||| || || || ||||| || |||||||| ||||||||||||| Sbjct 47702 GAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTA 47643 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 || || || | | | ||||| || || ||||||| ||||| |||||| Sbjct 47642 AGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAACT 47583 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | | || | ||||| || || | ||| ||||| | | ||||| || ||||| | Sbjct 47582 CGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTAC 47523 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 | ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| | Sbjct 47522 CACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGT 47463 Query 63288 TGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 63346 |||| ||||||||||| || | ||| || ||| ||||||| || | | | | Sbjct 47462 TGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGTTC 47404 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || || || || ||||| || || || | || || || | ||||| ||||| Sbjct 47403 AAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATA 47344 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 || || || || || ||| |||| | || || || || || | || | | | Sbjct 47343 CCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGA 47284 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || ||||| || || || ||||| || | || || | || ||| Sbjct 47283 GTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTG 47224 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || ||||| | | || ||||| || | ||||| || ||||| ||||| | Sbjct 47223 TATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATGAT 47165 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||| ||||| || | ||| | || ||| || || | | |||||| ||| | ||| Sbjct 47164 CATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACAA 47105 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||| || |||||||||||||| ||||| || || || | ||| | |||| ||| Sbjct 47104 GGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCGAG 47045 Query 63706 TTTATCCTTAT 63716 || || |||| Sbjct 47044 TTCCTCTTTAT 47034 >seq37 Length=309367 Score = 147 bits (162), Expect = 3e-30 Identities = 551/857 (64%), Gaps = 24/857 (3%) Strand=Plus/Plus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || ||||| ||| | || || || ||||| || || ||||| || | | || || || Sbjct 135285 TTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTTTTGCCGCCAAGGGAGATGTTC 135344 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| ||||| || ||||| || || | || | || | || | Sbjct 135345 TCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGG 135404 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | ||| ||||| ||||| || || ||||| | | | ||||| || | || Sbjct 135405 AGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGG 135464 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | || |||||| |||||||||| || || |||||||| || || || || ||||| Sbjct 135465 GCACAAGGGAGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATG 135524 Query 32610 -----GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC---ATCAAAC 32661 |||| | |||||| | | || | | | | | | | | | | || Sbjct 135525 TCCTGGATCAT-CTGTTTGCTGGCACG-----TCCCTTGA--GGTGAGAGTGGAGGAGAC 135576 Query 32662 ATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 32721 | || || ||| ||| |||||||| || | | ||| | ||||| ||||| | || | Sbjct 135577 AGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGAC 135636 Query 32722 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAA 32781 | ||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| | Sbjct 135637 CAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGA 135696 Query 32782 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GTA 32838 | || || || || ||||| |||| ||| | || || | | | | | || | | Sbjct 135697 TACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGTAGAGTTCTTATCCTGGA 135756 Query 32839 TCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||| | || |||||||| ||||||||| | ||||| || || || | || || Sbjct 135757 TCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTG 135815 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 ||||| || | | | || || | || ||||| || | || || || Sbjct 135816 AAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTT 135875 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || || ||||| || || || || || || |||||||||| |||||||| ||| Sbjct 135876 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATC 135935 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | ||||| || | | ||| ||||| || || ||||| ||| || Sbjct 135936 TGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAGCG 135995 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAA 33134 || || || | | || || || |||| ||||||| || | | || ||||| Sbjct 135996 AAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCCAG 136055 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 || | || ||| || || | ||| | || || ||||||| || || ||||||||||| Sbjct 136056 TCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTC 136115 Query 33195 TTATACATATTCCAGAT 33211 || ||||| | |||||| Sbjct 136116 TTGTACATTTGCCAGAT 136132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626645809600