Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq37 298 1e-75 seq643 297 4e-75 >seq37 Length=309367 Score = 298 bits (330), Expect = 1e-75 Identities = 590/862 (68%), Gaps = 32/862 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||| || |||||||| || || Sbjct 136132 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 136073 Query 42360 GCCAAGGACACGGCCGGCTGG-------GAGTCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 ||||||| || |||| || | ||| | ||| ||| | | ||| | Sbjct 136072 TCCAAGGATCTCCACGACTGGAACAACCGATTGACT---TCAGA-CGAGCAATACTTCAT 136017 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 | |||| || || |||||||| ||||| |||||||| ||||||||||| || | Sbjct 136016 CTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGA 135957 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 | |||| ||||| ||| | ||||| || |||||||| || |||||||| Sbjct 135956 GCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCAT 135897 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || |||||| | ||||| || ||| || || || | || |||||| ||| || Sbjct 135896 GATGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCC 135837 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||||| || ||||| ||| | || || || || |||||| |||||||| Sbjct 135836 TGCCCAGCGTACATACCTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGGC 135777 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 ||| ||||| || |||||| || | || | || || | || | || || || Sbjct 135776 GGATTGGGCCATCCGATGGATCCAGGATAAGAACTCTACCTTTGCTCAGCGTCTTGTTGC 135717 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| | ||||| ||||| ||||||||| || ||||| || ||||||||||||||||| Sbjct 135716 TTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAA 135657 Query 42773 GCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || || || ||||| || || | ||| || ||||| ||||| | || |||| Sbjct 135656 GAAGCGTGGCCTC-ATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGATGAGG 135598 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCG 42890 | || || | ||||||||||| ||||| ||| |||||| ||| || ||| | Sbjct 135597 GTCTTCACACCGACTTTGCCTGTCTCCTCCACTC---TCACCTCAAGGGACGTGCCAGC- 135542 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 || || | ||| || ||| ||||| || ||||| || ||| ||||||| || || Sbjct 135541 AAACAGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACT 135482 Query 42951 CAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | || ||| ||| ||||| ||||||||||| | |||||||| |||||||| | Sbjct 135481 GAGGCTCT-CCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGA 135423 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACAC 43063 | |||||| || | |||||| | | |||| || || | ||||| | Sbjct 135422 ATTCGTCGCTGATCGTCTCCT------CGTTGCTCTCGGCAACGAGAAGGTGTACAAGTC 135369 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 | ||| |||||||| |||||||||||||| | | ||||| |||||||| ||||| Sbjct 135368 CACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAAACCAACTTCTTCGA 135309 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 ||||||||| || ||||||||| Sbjct 135308 GAAGCGCGTTGCTGACTACCAG 135287 >seq643 Length=117438 Score = 297 bits (328), Expect = 4e-75 Identities = 891/1367 (65%), Gaps = 59/1367 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||| ||||||| |||| | || || Sbjct 48571 GTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGG 48512 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || || ||||||| || ||||||| || || || || ||||| || | || Sbjct 48511 CTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAAGTACTGGCGGTAGGCATAGGAGCAAC 48452 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||||||||||| | | ||||| ||| || || ||| | ||||||||| Sbjct 48451 GAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTCTCGGAGGGGTTCCCAGTCCCA 48392 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | | ||||| | | | || ||||||||| ||||| || | |||| Sbjct 48391 AAGGTC--AGAGGGCTTGACATT-------CCACATGTCGAACTGGAGAATACCCTCAGA 48341 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCT 244388 | | ||| ||||| | |||| | ||||||||| || || || || | |||| | Sbjct 48340 GGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTAGCGAGTTGCACAGACGT 48281 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 || ||||| |||| |||||||||||||||||| |||||||| || || |||| Sbjct 48280 AGTA-AGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGAGCCT--- 48225 Query 244449 CGCAGGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 |||| || |||| |||| | | |||| | || || || || ||||| || Sbjct 48224 --CAGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCAAGACCTTGCACACC 48167 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 | || ||||||| ||| ||| ||||| | || || | || ||||| ||| Sbjct 48166 AAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGACAGGGTAGTGGTT 48107 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623 | ||||||| | |||||| | |||||| | | | ||| ||| |||| || Sbjct 48106 GACGTCGATGATCTTGTTCAAATTGCGGACAACGACTTGAGTGACCTCGTGCAGCTTCTT 48047 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC--- 244680 |||||||| | | | ||| || | || ||| || |||||| Sbjct 48046 GAAGTCGTA---GCAAGCATCTTCATAGTTGATGA--------AA------GAGGGCAGA 48004 Query 244681 GAC--GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCG 244738 ||| | ||| |||||||| || || ||||| || | | | ||| | | ||||| Sbjct 48003 GACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCA 47944 Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 ||||| ||||| || |||||| || |||| || || || |||| |||||| Sbjct 47943 GTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAG 47884 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858 ||||||||||||||||| || |||||||| |||||| | || | | || | Sbjct 47883 TGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTAC 47824 Query 244859 CAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTAC 244918 || || | | |||||||| | | ||||| |||| |||||| |||||| |||| Sbjct 47823 CAAAGCTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTAC 47764 Query 244919 AGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATG 244978 || ||||| || ||| || || || | ||||| ||||| ||||||||| Sbjct 47763 AGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATG 47704 Query 244979 AGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCC 245038 ||| |||| |||||| || ||| | || |||||| || || |||||||| || || Sbjct 47703 AGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCT 47644 Query 245039 TGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAA 245097 ||| ||||| | | | ||| ||| || ||| ||||| | || || | || Sbjct 47643 AAGAACAGGTCACGAGCGCGGACCTCCTCCTTACC-GTGATTCTTTCGGAGATCAAGGAA 47585 Query 245098 GTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTT 245157 || ||||||||| ||||||| ||||| | ||||| |||| ||| || || |||||||| Sbjct 47584 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 47525 Query 245158 GCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTA 245213 || ||||||| || | | ||||| |||||| | ||||| | || || | Sbjct 47524 ACCACCCTGGT----CAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGA 47469 Query 245214 TGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGC 245270 | ||||| || || ||||| || |||||| | ||| || | | || ||| | Sbjct 47468 TACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGG 47409 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 | | || ||| | || || || |||||| || | ||| || |||||| ||| | Sbjct 47408 CGTT---CAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTAT 47352 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | || || || ||||||||| |||||| | | || ||||| || || ||||| | Sbjct 47351 CGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAG 47292 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||| || | | | |||||| | ||||||||| || || || ||| Sbjct 47291 GCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAG 47245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944331220333760