Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31]
676 sequences; 36,468,289 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq643 187 3e-42
seq37 129 7e-25
seq546 95.1 2e-14
>seq643
Length=117438
Score = 187 bits (206), Expect = 3e-42
Identities = 569/868 (66%), Gaps = 21/868 (2%)
Strand=Plus/Plus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670
||| ||| | ||| ||||||| ||||| | || ||| || || |||||||| |||
Sbjct 47152 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 47211
Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730
|||||||||||| || ||||| | | |||| || |||| || || | ||
Sbjct 47212 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCTTCACTCATGCAAGCCCCACTTTATT 47271
Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790
|||||| ||||| ||| || || | || || |||||| ||| | ||||||||
Sbjct 47272 CAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAGGA 47331
Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850
|| |||| || |||| || |||| |||||| || || ||| ||||||
Sbjct 47332 CAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGG 47391
Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910
|||||| || || || ||| || | |||| ||| || ||||| ||
Sbjct 47392 TGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACCAA 47451
Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970
|||| || | ||||| |||| ||||| || || || ||| ||| || || || ||
Sbjct 47452 TGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGT 47511
Query 111971 AAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCA 112024
|||| | ||| | |||| || || |||| |||| ||||||||||||||
Sbjct 47512 TGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCA 47568
Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGG 112082
||| || || | ||||||||||| | || || || ||| | ||||||| ||||
Sbjct 47569 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 47628
Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142
| || || || |||| ||||| ||||| || ||||| ||||||||| | || |||
Sbjct 47629 T--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGA 47686
Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGG 112201
| ||| | ||| ||||| | || || || || || || || || | || | ||
Sbjct 47687 AACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTACGG 47745
Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261
||| || ||||| || || ||| |||||||||| ||| || || | | || | |
Sbjct 47746 TGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGTCT 47803
Query 112262 GCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318
|| ||| | || | | ||| | || ||||| || | || || ||||| || | ||
Sbjct 47804 ATCAAGGCT-CAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAACCC 47862
Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378
| ||||| ||||| || ||| || | |||||||| |||||||| | ||| ||
Sbjct 47863 TTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACCAT 47922
Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438
| || |||||||| || || || ||| | |||| | | |||||| |||||
Sbjct 47923 CCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTGT 47982
Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCC 112466
|| ||||| || || | |||| |||
Sbjct 47983 TTGCAACCTTGCCTCCTTGTCTCTGCCC 48010
>seq37
Length=309367
Score = 129 bits (142), Expect = 7e-25
Identities = 351/525 (67%), Gaps = 17/525 (3%)
Strand=Plus/Minus
Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 101873
||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | |
Sbjct 136096 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 136037
Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933
| | || | | ||||| |||| || || ||||| |||| ||||| || ||
Sbjct 136036 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 135977
Query 101934 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 101991
|| ||||||| | | | | | | || | ||||| || |||| | || || |||
Sbjct 135976 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 135919
Query 101992 CTTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 102050
||||||| || || | |||| ||| | | | || || |||||| |||
Sbjct 135918 GCTTCTATG-GTTTCCAGATCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 135860
Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110
|| || | || || ||||| ||| || | | ||||| | ||| | | ||
Sbjct 135859 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 135800
Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 102167
|||| || || | |||||| ||||||||||| || ||| | |||| || ||
Sbjct 135799 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 135741
Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227
| |||||||| |||| || | || ||||| |||||||||||||||||| |||
Sbjct 135740 --TACCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 135683
Query 102228 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286
|||| ||| | || | |||||||||||||| || |||||||| ||||| |||| ||
Sbjct 135682 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 135624
Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||||||| || |||||||| ||||| || ||| || |||||
Sbjct 135623 TAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGC 135579
>seq546
Length=71430
Score = 95.1 bits (104), Expect = 2e-14
Identities = 190/275 (69%), Gaps = 10/275 (4%)
Strand=Plus/Plus
Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123
||||||||||||||| || |||| |||||| || || | || | | | || ||
Sbjct 61534 GGCATCAATCTCATCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 61593
Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 16182
||| ||||||||| | || ||||||||||||||||| || || | | || ||
Sbjct 61594 ATCTCGTACACGCGAAGGTCCAACACCAACAAACATCTCAACGAATTCGGAACCGCTCAC 61653
Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242
|| | |||||| || ||| |||||||| |||| ||| || | |||||||| |
Sbjct 61654 GCTGAA-GAAGGGTACTCCAGACTCACCCGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 61712
Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 16299
|||| || || || | | ||||||||||| |||||||| || || |||| |
Sbjct 61713 TACCGGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCCAGCTTTTCAAACT 61772
Query 16300 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATCTC 16333
||||||| ||||| ||||| | ||||| |||
Sbjct 61773 ---TCTCAGGCTGCTTCAAGAAGCT-CACAAACTC 61803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620737154726720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |