Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq37 176 1e-38 seq643 129 2e-24 seq659 118 3e-21 seq312 116 1e-20 >seq37 Length=309367 Score = 176 bits (194), Expect = 1e-38 Identities = 264/370 (71%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| ||||| | ||||| |||||| || ||||| || |||| Sbjct 135930 CCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATGGAGAACATCCACTCCGAAACAT 135871 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423 | || || || ||||| |||||||| || | | |||| | ||| || | |||||| Sbjct 135870 ACTCCCTCCTCATCGATACCTACATCAAGGACCCTGCCCAGC-GTACATACCTCTTCAAC 135812 Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||| || | ||||||| || |||||| | || ||||| || |||||||||| Sbjct 135811 GCCGTTGACACTATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAG 135752 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 || ||| | | |||||| ||||| ||||||||||||| || ||||| || || Sbjct 135751 GATAAGAACTCTACCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTC 135692 Query 133544 ttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || |||| | || || ||||| || |||||||| | | ||||| || Sbjct 135691 TTCAGCGGTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCT 135633 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTT 133662 | | ||||||||||| || ||||| | || |||| ||||||||||| |||||| | | Sbjct 135632 GAGCTTTTCTAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTCT 135573 Query 133663 ACTTCACTCT 133672 || |||||| Sbjct 135572 CCTCCACTCT 135563 >seq643 Length=117438 Score = 129 bits (142), Expect = 2e-24 Identities = 545/853 (64%), Gaps = 11/853 (1%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| |||||| | |||||| ||||||||| || || |||||| || | ||||| | Sbjct 47963 CGCAGTATTCAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTT 47904 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 ||||| || | || || ||||||||| || ||| | ||| |||| ||||| ||| Sbjct 47903 GGTTACTCTTGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCT 47844 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || ||||| ||| || | | || || || |||| | || | Sbjct 47843 GGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGACTTGCGACCCTTACCCT 47784 Query 155806 CCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCC 155863 | ||| || |||| || | ||| | | || |||||||| || ||| || || Sbjct 47783 CTCTCTCGTACTTTTCGTACAGAGCCTCAAAT--TCGTCACCGTAGCAGTCAGCAAGGCC 47726 Query 155864 AGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAA 155923 |||||| | | ||||| | || | ||| || | ||||||| ||| || Sbjct 47725 AGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAA 47666 Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTG 155983 | |||| ||||| ||| |||| ||||| | || |||||| | ||||| Sbjct 47665 AAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTG 47606 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 |||||| || || || | ||| || | || | || |||||| || || || || Sbjct 47605 ATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGC 47546 Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 || |||| | |||| |||||||| || || || |||||||| || ||||| || Sbjct 47545 GAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACAC 47486 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 || ||||| |||| ||||| |||||||| |||||||| ||| || | || |||| Sbjct 47485 ACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT 47426 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGC 156219 | || | || | | ||||||||||| | |||| || ||||| || | Sbjct 47425 GGCACGGATTCGGTGGGCGTTCAAGCCAATACCACCAG-CCATCTTGGAAATCATGGCAC 47367 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 | ||| | |||| | | ||||| ||||| || || | ||| | || ||| Sbjct 47366 AAGTCTTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 47307 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | ||||| |||| || || |||||||||| || || |||||||| | | Sbjct 47306 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 47247 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCCGTGA 156398 | |||| | ||||| | |||||||||| | ||||| || |||| || Sbjct 47246 AGAACTTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGA 47187 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 | || | || ||| | ||| ||||||||| || ||||| |||| || ||||| Sbjct 47186 TTCCA-ACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATC 47128 Query 156459 CGCAGAAGGTATG 156471 | || | ||||| Sbjct 47127 TGTAGCAAGTATG 47115 >seq659 Length=216697 Score = 118 bits (130), Expect = 3e-21 Identities = 382/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| |||| || Sbjct 40167 ATGAGTCCACAAATTTCGCAAACGTGGACTCGGAAAGCATCCGACACCTCAAATAGACGC 40108 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| || |||||||| | |||||| |||||||| ||||| || ||||| Sbjct 40107 TCCTTCAGGAAGGCAGCAGCACCGTGAGCAATCATGCAATCACGTTCCATCTCTCCGAAT 40048 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| || || | ||||||| ||||||| || || | | | | ||| Sbjct 40047 CGCAGACCACCATCTCGGGCACGACCCTCGACAGGCTGCCGGGTCATAATCTGAACGGGA 39988 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || || || || ||| |||| ||||| || ||||| |||||| ||| Sbjct 39987 CCACGGGCACGAGCGTGGATCTTGTCATCCACCATGTGACGAAGACGTTGGTAGTATGTA 39928 Query 251647 GGACCGATGAAGATGCTCGA--AGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704 || |||| ||||| || || | | | | ||| || || | || ||||| || | Sbjct 39927 GGTCCGAAGAAGA--CTTGAGCACGGAGCTTACGTCCGGTGTGACCATTGTACATGACCT 39870 Query 251705 CGTTTCCATTAGATTCATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATCT 251761 | || ||||| ||||| ||| || | | ||||| | | | | Sbjct 39869 CAAAACCTCGAGATTGGTAACCGTGTTTTCTCAGAATATCTGACACGGAGT---CGACGG 39813 Query 251762 TGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTA 251821 ||| | | || || |||| || | | |||| | | | || || | | Sbjct 39812 TGACATCAGTGAATGGCGTTGCGTCACCCTCCATACCCTCCAGTGTTGAGACCTTACTCA 39753 Query 251822 AAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGA 251881 |||| ||| ||| ||||| || ||||||||| |||||||| || || ||||||| Sbjct 39752 AAAGACACTCAATCAAATGGGCAATTGTCATACGAGACGGAATAGCGTGAGGGTTGATGA 39693 Query 251882 TGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTT 251940 | ||||| || |||| || || |||| |||||||||| | || ||| | Sbjct 39692 TAATGTCAGGAGTCAGACCCTCTCTGCTGAAAGGCATATCCTCCT-GTCGATAGGTAACA 39634 Query 251941 CCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || || |||||||| ||||||||||| |||||| |||||||| Sbjct 39633 CCGATTGTACCCTTTTGACCGTGACGAGAGGCGAACTTGTCACCAAT 39587 >seq312 Length=59172 Score = 116 bits (128), Expect = 1e-20 Identities = 204/297 (69%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 302568 AATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTAC 302627 || |||||| | | ||||| || || |||||||| ||||||||| || || || || Sbjct 36532 AAGGTCTTCAAGAGCCTTGACCAATCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGAC 36473 Query 302628 AGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCG 302687 || |||||||| ||||| | |||||| |||| || |||||||| | ||| || Sbjct 36472 CGCAGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGT 36413 Query 302688 TAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTT 302747 || || | | | ||| |||| ||||||||||| || ||||| |||| || ||| Sbjct 36412 AAGACCACGTAGGTAAGAGTTCTCGACGAAACCACGGGCTTCGGGAGAATAATCATCCTT 36353 Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807 ||| || || ||||| || | | || | || | || || |||||||| || ||| | Sbjct 36352 GGTGAAATGAGGCAGAGTACGATACTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGAT 36293 Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || || || | || | |||| |||||||| || | | | |||||||| || Sbjct 36292 TTGTTGACCGACAAGCGCAGTCATTTGCGAAATGTTGATAGAAGAACCCTTGGAACC 36236 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| | ||| || ||||| |||| ||||| |||||| | |||||||| Sbjct 37305 AGAATTTCTTTGAGACGAGGCACACCCAGGGTGACGTT---CTTGGAAGACACACCAGCG 37249 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||| | ||||||||||| || || || | Sbjct 37248 AAATGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAA 37189 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 37188 ACACCAACCATTTCACCAGG 37169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471804852219812