Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31]
676 sequences; 36,468,289 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq37 176 1e-38
seq643 129 2e-24
seq659 118 3e-21
seq312 116 1e-20
>seq37
Length=309367
Score = 176 bits (194), Expect = 1e-38
Identities = 264/370 (71%), Gaps = 4/370 (1%)
Strand=Plus/Minus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| || || ||| ||||| | ||||| |||||| || ||||| || ||||
Sbjct 135930 CCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATGGAGAACATCCACTCCGAAACAT 135871
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423
| || || || ||||| |||||||| || | | |||| | ||| || | ||||||
Sbjct 135870 ACTCCCTCCTCATCGATACCTACATCAAGGACCCTGCCCAGC-GTACATACCTCTTCAAC 135812
Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483
||| || | ||||||| || |||||| | || ||||| || ||||||||||
Sbjct 135811 GCCGTTGACACTATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAG 135752
Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543
|| ||| | | |||||| ||||| ||||||||||||| || ||||| || ||
Sbjct 135751 GATAAGAACTCTACCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTC 135692
Query 133544 ttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602
||||| ||||| || |||| | || || ||||| || |||||||| | | ||||| ||
Sbjct 135691 TTCAGCGGTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCT 135633
Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTT 133662
| | ||||||||||| || ||||| | || |||| ||||||||||| |||||| | |
Sbjct 135632 GAGCTTTTCTAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTCT 135573
Query 133663 ACTTCACTCT 133672
|| ||||||
Sbjct 135572 CCTCCACTCT 135563
>seq643
Length=117438
Score = 129 bits (142), Expect = 2e-24
Identities = 545/853 (64%), Gaps = 11/853 (1%)
Strand=Plus/Minus
Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685
||| |||||| | |||||| ||||||||| || || |||||| || | ||||| |
Sbjct 47963 CGCAGTATTCAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTT 47904
Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745
||||| || | || || ||||||||| || ||| | ||| |||| ||||| |||
Sbjct 47903 GGTTACTCTTGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCT 47844
Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805
| || || ||||| ||| || | | || || || |||| | || |
Sbjct 47843 GGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGACTTGCGACCCTTACCCT 47784
Query 155806 CCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCC 155863
| ||| || |||| || | ||| | | || |||||||| || ||| || ||
Sbjct 47783 CTCTCTCGTACTTTTCGTACAGAGCCTCAAAT--TCGTCACCGTAGCAGTCAGCAAGGCC 47726
Query 155864 AGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAA 155923
|||||| | | ||||| | || | ||| || | ||||||| ||| ||
Sbjct 47725 AGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAA 47666
Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTG 155983
| |||| ||||| ||| |||| ||||| | || |||||| | |||||
Sbjct 47665 AAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTG 47606
Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043
|||||| || || || | ||| || | || | || |||||| || || || ||
Sbjct 47605 ATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGC 47546
Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100
|| |||| | |||| |||||||| || || || |||||||| || ||||| ||
Sbjct 47545 GAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACAC 47486
Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160
|| ||||| |||| ||||| |||||||| |||||||| ||| || | || ||||
Sbjct 47485 ACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT 47426
Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGC 156219
| || | || | | ||||||||||| | |||| || ||||| || |
Sbjct 47425 GGCACGGATTCGGTGGGCGTTCAAGCCAATACCACCAG-CCATCTTGGAAATCATGGCAC 47367
Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279
| ||| | |||| | | ||||| ||||| || || | ||| | || |||
Sbjct 47366 AAGTCTTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 47307
Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339
| || | ||||| |||| || || |||||||||| || || |||||||| | |
Sbjct 47306 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 47247
Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCCGTGA 156398
| |||| | ||||| | |||||||||| | ||||| || |||| ||
Sbjct 47246 AGAACTTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGA 47187
Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458
| || | || ||| | ||| ||||||||| || ||||| |||| || |||||
Sbjct 47186 TTCCA-ACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATC 47128
Query 156459 CGCAGAAGGTATG 156471
| || | |||||
Sbjct 47127 TGTAGCAAGTATG 47115
>seq659
Length=216697
Score = 118 bits (130), Expect = 3e-21
Identities = 382/587 (65%), Gaps = 12/587 (2%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | || || ||||| | | ||||||| || | ||| |||| ||
Sbjct 40167 ATGAGTCCACAAATTTCGCAAACGTGGACTCGGAAAGCATCCGACACCTCAAATAGACGC 40108
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| |||| || |||||||| | |||||| |||||||| ||||| || |||||
Sbjct 40107 TCCTTCAGGAAGGCAGCAGCACCGTGAGCAATCATGCAATCACGTTCCATCTCTCCGAAT 40048
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586
|| ||||||||||| || || | ||||||| ||||||| || || | | | | |||
Sbjct 40047 CGCAGACCACCATCTCGGGCACGACCCTCGACAGGCTGCCGGGTCATAATCTGAACGGGA 39988
Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646
|| || || || ||| |||| ||||| || ||||| |||||| |||
Sbjct 39987 CCACGGGCACGAGCGTGGATCTTGTCATCCACCATGTGACGAAGACGTTGGTAGTATGTA 39928
Query 251647 GGACCGATGAAGATGCTCGA--AGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704
|| |||| ||||| || || | | | | ||| || || | || ||||| || |
Sbjct 39927 GGTCCGAAGAAGA--CTTGAGCACGGAGCTTACGTCCGGTGTGACCATTGTACATGACCT 39870
Query 251705 CGTTTCCATTAGATTCATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATCT 251761
| || ||||| ||||| ||| || | | ||||| | | | |
Sbjct 39869 CAAAACCTCGAGATTGGTAACCGTGTTTTCTCAGAATATCTGACACGGAGT---CGACGG 39813
Query 251762 TGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTA 251821
||| | | || || |||| || | | |||| | | | || || | |
Sbjct 39812 TGACATCAGTGAATGGCGTTGCGTCACCCTCCATACCCTCCAGTGTTGAGACCTTACTCA 39753
Query 251822 AAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGA 251881
|||| ||| ||| ||||| || ||||||||| |||||||| || || |||||||
Sbjct 39752 AAAGACACTCAATCAAATGGGCAATTGTCATACGAGACGGAATAGCGTGAGGGTTGATGA 39693
Query 251882 TGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTT 251940
| ||||| || |||| || || |||| |||||||||| | || ||| |
Sbjct 39692 TAATGTCAGGAGTCAGACCCTCTCTGCTGAAAGGCATATCCTCCT-GTCGATAGGTAACA 39634
Query 251941 CCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|| || || |||||||| ||||||||||| |||||| ||||||||
Sbjct 39633 CCGATTGTACCCTTTTGACCGTGACGAGAGGCGAACTTGTCACCAAT 39587
>seq312
Length=59172
Score = 116 bits (128), Expect = 1e-20
Identities = 204/297 (69%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 302568 AATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTAC 302627
|| |||||| | | ||||| || || |||||||| ||||||||| || || || ||
Sbjct 36532 AAGGTCTTCAAGAGCCTTGACCAATCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGAC 36473
Query 302628 AGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCG 302687
|| |||||||| ||||| | |||||| |||| || |||||||| | ||| ||
Sbjct 36472 CGCAGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGT 36413
Query 302688 TAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTT 302747
|| || | | | ||| |||| ||||||||||| || ||||| |||| || |||
Sbjct 36412 AAGACCACGTAGGTAAGAGTTCTCGACGAAACCACGGGCTTCGGGAGAATAATCATCCTT 36353
Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807
||| || || ||||| || | | || | || | || || |||||||| || ||| |
Sbjct 36352 GGTGAAATGAGGCAGAGTACGATACTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGAT 36293
Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
|| || || | || | |||| |||||||| || | | | |||||||| ||
Sbjct 36292 TTGTTGACCGACAAGCGCAGTCATTTGCGAAATGTTGATAGAAGAACCCTTGGAACC 36236
Score = 84.2 bits (92), Expect = 6e-11
Identities = 103/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||||| | ||| || ||||| |||| ||||| |||||| | ||||||||
Sbjct 37305 AGAATTTCTTTGAGACGAGGCACACCCAGGGTGACGTT---CTTGGAAGACACACCAGCG 37249
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| || ||||| || | ||||| | ||||||||||| || || || |
Sbjct 37248 AAATGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAA 37189
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 37188 ACACCAACCATTTCACCAGG 37169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471804852219812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |