Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq552 120 4e-21 seq643 113 6e-19 seq658 104 3e-16 seq37 100 3e-15 >seq552 Length=26181 Score = 120 bits (132), Expect = 4e-21 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251 ||||||||||| |||||||| || ||||| |||| |||||| | || |||||||||||| Sbjct 1274 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 1215 Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||| | |||||||| |||||||||||||| || || Sbjct 1214 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 1174 >seq643 Length=117438 Score = 113 bits (124), Expect = 6e-19 Identities = 205/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| || || |||| ||| || || || |||||||| |||| |||||||| Sbjct 47518 CTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTTGGA 47459 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || ||||| || || | ||| | ||| | ||| || | ||| ||| ||||| Sbjct 47458 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCAAGCC 47399 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || ||||| || |||||||| || || Sbjct 47398 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 47339 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| || || || ||||| || || || || || | || || Sbjct 47338 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGAGTACC 47279 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| | ||||| | || ||||| |||| | |||||| || ||| || Sbjct 47278 GGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 47219 >seq658 Length=81295 Score = 104 bits (114), Expect = 3e-16 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||| || || || ||||| ||||| | ||| | || ||||||||| Sbjct 35459 GACAGCACTGGCGGAACCGTCACCTGCGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 35518 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| | Sbjct 35519 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 35578 Query 19167 AAGGGATTCGAG 19178 |||| |||||| Sbjct 35579 AAGGCCTTCGAG 35590 >seq37 Length=309367 Score = 100 bits (110), Expect = 3e-15 Identities = 173/250 (69%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | |||||| |||||| |||||||| ||||| | || ||||| Sbjct 135282 GCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTTTTGCCGCCAAGGGAGATG 135341 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| ||||| | || Sbjct 135342 TTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACG 135401 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || || || ||||| || ||||||||||| ||||||| || ||||||||||| Sbjct 135402 AGGAGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGC 135461 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| | | |||||| | ||| || ||||| ||| ||| Sbjct 135462 AGGGCACAAGGGAGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATA 135521 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 135522 ATGT-CCTGG 135530 Score = 91.5 bits (100), Expect = 2e-12 Identities = 176/251 (70%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGA 869273 || || ||||||||||| |||||||||||||| |||||| | || || || ||| || Sbjct 135633 AGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG--GAAGCAAAGGCACCGCTGA 135690 Query 869274 AAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT 869333 | ||||| ||||| ||||| ||||| | | || |||| |||||| || || | || Sbjct 135691 AGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAG--GTAGA-GTTCT 135747 Query 869334 CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGA 869393 | | |||||| || ||||| || ||||| || | | | || | ||||| | Sbjct 135748 TATCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAA 135807 Query 869394 TGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGC 869452 |||| ||||||| || | | ||| |||||||||| ||||| ||||| ||||| Sbjct 135808 CGGCGTTGAAGAGGTATGTAC-GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGG 135866 Query 869453 GAATAGGTCTC 869463 || || || || Sbjct 135867 GAGTATGTTTC 135877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107083724274292