Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31]
676 sequences; 36,468,289 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq37 149 1e-29
seq552 120 5e-21
seq145 104 4e-16
>seq37
Length=309367
Score = 149 bits (164), Expect = 1e-29
Identities = 223/309 (72%), Gaps = 11/309 (4%)
Strand=Plus/Plus
Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421
||||| ||||| || || ||||||||||| |||||||||||||| ||||||| | |
Sbjct 135618 TCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAA--G 135675
Query 794422 AAACTGC-CCGA-GAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAA 794479
|| || ||| ||| ||||| ||||| ||||| ||||| | || || |||| ||||
Sbjct 135676 CAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAA 135735
Query 794480 AAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACC 794538
| || || | || | | |||||| || ||||| || ||||| || | |
Sbjct 135736 AGGT----AGAGTTCTTATCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATG 135791
Query 794539 GAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTA 794597
| || | ||||| | |||| ||||||| || | || | | |||||||||| |||
Sbjct 135792 CAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACG-CTGGGCAGGGTCCTTGATGTA 135850
Query 794598 GGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCC 794657
||| ||||||||||| ||||| || || ||||||||||| || || ||||||||| ||
Sbjct 135851 GGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACC 135910
Query 794658 ATAAAAGCA 794666
||| |||||
Sbjct 135911 ATAGAAGCA 135919
Score = 104 bits (114), Expect = 4e-16
Identities = 165/233 (71%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976
|||||| |||||| |||||||| ||||| | || ||||| |||||| | |||
Sbjct 135300 ACGCGCTTCTCGAAGAAGTTGGTTTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAA 135359
Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036
||||||| | | ||| ||||||| ||||| | | || || || || ||||||
Sbjct 135360 GGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGGAGACGATCAGCGACG 135419
Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGA 794095
||||| |||||||| ||||||| || ||||||||||| || || || ||| || |
Sbjct 135420 AATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCACAAGGG-AGAGC 135478
Query 794096 CTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148
||| | | |||||| | ||| || ||||| ||| |||| || | |||||
Sbjct 135479 CTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATGT-CCTGG 135530
>seq552
Length=26181
Score = 120 bits (132), Expect = 5e-21
Identities = 87/101 (86%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 2035653 AACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATC 2035712
||||||||||| ||||||||||| ||||| | || ||||||||||| |||||| | |||
Sbjct 1274 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 1215
Query 2035713 AAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
||||||||| | |||||||| |||||||||||||| || ||
Sbjct 1214 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 1174
>seq145
Length=74696
Score = 104 bits (114), Expect = 4e-16
Identities = 78/92 (85%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| | |
Sbjct 4538 GTACTTGGTAACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 4479
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| ||||| || | |||||||||||| ||||
Sbjct 4478 GATGAGGCGGACAGAGGTCTGGATCTCTCGGG 4447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916174490796764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |