Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq37 149 1e-29 seq552 120 5e-21 seq145 104 4e-16 >seq37 Length=309367 Score = 149 bits (164), Expect = 1e-29 Identities = 223/309 (72%), Gaps = 11/309 (4%) Strand=Plus/Plus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 ||||| ||||| || || ||||||||||| |||||||||||||| ||||||| | | Sbjct 135618 TCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAA--G 135675 Query 794422 AAACTGC-CCGA-GAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAA 794479 || || ||| ||| ||||| ||||| ||||| ||||| | || || |||| |||| Sbjct 135676 CAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAA 135735 Query 794480 AAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACC 794538 | || || | || | | |||||| || ||||| || ||||| || | | Sbjct 135736 AGGT----AGAGTTCTTATCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATG 135791 Query 794539 GAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTA 794597 | || | ||||| | |||| ||||||| || | || | | |||||||||| ||| Sbjct 135792 CAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACG-CTGGGCAGGGTCCTTGATGTA 135850 Query 794598 GGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCC 794657 ||| ||||||||||| ||||| || || ||||||||||| || || ||||||||| || Sbjct 135851 GGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACC 135910 Query 794658 ATAAAAGCA 794666 ||| ||||| Sbjct 135911 ATAGAAGCA 135919 Score = 104 bits (114), Expect = 4e-16 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 |||||| |||||| |||||||| ||||| | || ||||| |||||| | ||| Sbjct 135300 ACGCGCTTCTCGAAGAAGTTGGTTTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAA 135359 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036 ||||||| | | ||| ||||||| ||||| | | || || || || |||||| Sbjct 135360 GGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGGAGACGATCAGCGACG 135419 Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGA 794095 ||||| |||||||| ||||||| || ||||||||||| || || || ||| || | Sbjct 135420 AATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCACAAGGG-AGAGC 135478 Query 794096 CTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148 ||| | | |||||| | ||| || ||||| ||| |||| || | ||||| Sbjct 135479 CTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATGT-CCTGG 135530 >seq552 Length=26181 Score = 120 bits (132), Expect = 5e-21 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 2035653 AACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATC 2035712 ||||||||||| ||||||||||| ||||| | || ||||||||||| |||||| | ||| Sbjct 1274 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 1215 Query 2035713 AAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||| | |||||||| |||||||||||||| || || Sbjct 1214 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 1174 >seq145 Length=74696 Score = 104 bits (114), Expect = 4e-16 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 4538 GTACTTGGTAACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 4479 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | |||||||||||| |||| Sbjct 4478 GATGAGGCGGACAGAGGTCTGGATCTCTCGGG 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916174490796764