Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq393 98.7 7e-15 seq312 98.7 7e-15 >seq393 Length=99189 Score = 98.7 bits (108), Expect = 7e-15 Identities = 254/385 (66%), Gaps = 3/385 (1%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||||| || || | ||||| |||||||| | ||| || ||||| ||||| || || | Sbjct 5848 CGGCAGAAACGTTCATGATACCGTTGGCATCGAGATCGAAGGTGACCTCAATCTGGGGAA 5907 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | ||||||| ||||| || | | || | |||| || || || | Sbjct 5908 CACCACGGGGAGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCT 5967 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | ||| | || ||||||||| | | |||||| || ||| || || || || Sbjct 5968 TGGTGCGCTGGCGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGA 6027 Query 281604 AAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 | || | || || ||| || || ||||| || ||||| | |||| |||| Sbjct 6028 AGGTAGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATAAGCTTGG 6087 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| ||||||||||| || || | ||| ||||| ||||| | ||| || | || | || Sbjct 6088 TCATCATACCACCAGCGGTCTCGATACCGAGAGAGAGAGGGGCGACGTCGAGGAGCAGAA 6147 Query 281724 TAT--TTTGAAGTTTTTC-ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | | || | | || | | || | |||| || ||||| || || | ||| |||| Sbjct 6148 TCTCGTTGGTGGCCTTGCTAGAGGTGTCACCAGAGAGGATAGCAGCCTGGACAGCGGCAC 6207 Query 281781 CATATGCAACAGCTTCATCAGGATT 281805 | || |||||||| |||||||| || Sbjct 6208 CGTAGGCAACAGCCTCATCAGGGTT 6232 Score = 93.3 bits (102), Expect = 3e-13 Identities = 216/326 (66%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 282146 TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 282205 |||| ||||| ||||| || | ||| | | || ||||| || || ||||||||| Sbjct 6689 TTATGTTTTCGTTTGAACTCGTTAACGAAGTGGTTAACGAGACGGTTGTCGAAATCTTCA 6748 Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 282265 || ||||| | ||||| || | |||| | || | ||| | || || |||| | Sbjct 6749 CCACCCAAGTGAGTATCACCGGCAGTAGACTTGACCTCGAAGATACCTTCCTCAATGGTA 6808 Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325 | |||| ||||| || |||||||| | ||| || || || || || || Sbjct 6809 AGGAGAGATACATCGAAAGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACCC 6868 Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 || || || |||||||| || |||| || ||||| || || || || || |||| Sbjct 6869 TCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCGG 6928 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||| || ||||| || || || ||||| || || || || | || || ||||| Sbjct 6929 AGAACGTTGAGACCGGCGATGAGACCGGCATCCTTGGTAGCCTGACGCTGAGAGTCGTTG 6988 Query 282446 AAATATGCAGGAACAGTAATAACGGC 282471 || || ||||| || || | |||||| Sbjct 6989 AAGTAGGCAGGGACGGTGACAACGGC 7014 >seq312 Length=59172 Score = 98.7 bits (108), Expect = 7e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| | |||| || |||||||| |||||||||||| | ||||||||| Sbjct 34979 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 35038 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 || || |||||| |||| | || || | ||| |||| || ||||| |||| Sbjct 35039 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCATGAGGTCGGTGTGCCTC 35090 Score = 86.0 bits (94), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || ||||||||||| | ||||||||||| |||||| | ||| |||| || | || ||| Sbjct 36422 GAGTTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTCATTGATACTGCGGTCAAGACT 36481 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239 ||||| |||||||| ||||| || | | |||||| |||||||| Sbjct 36482 GCTGAAACTGGTTACATTCAGCGACGATTGGTCAAGGCTCTTGAAGA 36528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740597211256776