Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq643 214 2e-50 seq37 100 4e-16 >seq643 Length=117438 Score = 214 bits (236), Expect = 2e-50 Identities = 1008/1583 (64%), Gaps = 41/1583 (3%) Strand=Plus/Minus Query 110524 AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTG 110583 ||| ||||| || || || ||| |||||| || | ||||| | | ||| ||||| Sbjct 48715 AATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTG 48656 Query 110584 GATGGAACCCCCCGCCTTCACCA----TGAGATCCTTCATATCCTTGGACCAGAGACCAA 110639 ||| ||||| | ||| || || | | ||||||| | | |||||| ||||| | Sbjct 48655 GATAGAACC----GTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCCA 48600 Query 110640 TCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTC 110699 | | || || |||| || |||||||| ||||| || || ||| || Sbjct 48599 TGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACTC 48540 Query 110700 TTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTG 110759 | |||||||||| | ||||| || ||||||||||| || || || | || || | Sbjct 48539 GGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGCG 48480 Query 110760 CGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGA 110819 || ||| || ||||| || || | | |||||||| || | ||| | ||||| Sbjct 48479 AAGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGA 48420 Query 110820 TGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTC 110877 || ||| |||||||| | | | || || || || |||| ||||||| Sbjct 48419 CATCCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAG-GGCTTGACATTCC-ACATGTC 48362 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 ||||| || | || | || || || || |||| ||||| |||| ||||| | Sbjct 48361 GAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTC 48302 Query 110938 TTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAG 110996 | ||| | || ||||| || |||| ||||| || ||||| || ||||| | Sbjct 48301 CTTAGCGAGTTGCACAGA-CGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCT 48243 Query 110997 CATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCG 111056 |||| ||| || ||| || ||||| | |||| || || |||| | Sbjct 48242 TGTTCAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAG 48183 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116 | |||||||| ||||| | |||||| |||| ||| ||||| || || || || | Sbjct 48182 CAAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTT 48123 Query 111117 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 || || || || ||| |||| ||| | ||| | ||| | | |||| Sbjct 48122 GGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACGACTTGAGTGA 48063 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAA 111233 || || || || | | || | || || ||||||| ||| | || | Sbjct 48062 CCTCGTGCAGCTTCTTGAAGTCGTA---GCAAGCATCTTCATAGTTGATGAAAGAGGGCA 48006 Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293 | | | || || | ||||||||||| |||||| | ||| || | || | Sbjct 48005 GAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCT 47946 Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353 | || || | |||||| || || || || | ||||||||||||||||| |||| Sbjct 47945 CAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGC 47886 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 | |||||||||||||||| | || | || ||||| ||||| | | ||||| || | Sbjct 47885 AGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGT 47826 Query 111414 TCCAAA-CATCGGCGGCTGG-TACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTG 111470 ||||| | || | | || | || | | ||| ||| | ||||| |||||||||| Sbjct 47825 ACCAAAGCTTCTGAGCCTTGATAGACTTGCGA---CCCTTACCCTCTCTCTCGTACTTTT 47769 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGA 111529 ||| || || ||||| || ||||| ||| | || || || || || || || Sbjct 47768 CGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGG-GCATTCGTTAGGG 47710 Query 111530 CAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 || | |||| ||||| || | ||| || |||||||||||||| || || ||||| Sbjct 47709 CACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAA 47650 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 || | | | || || || | | || |||| || | ||| || || ||| | ||| Sbjct 47649 AGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCA 47590 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCC 111703 |||||||| | || || ||||||||||||||||| |||| |||| || || | Sbjct 47589 AGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGC 47530 Query 111704 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 || | ||| | || | || || || || ||| ||| || || || ||||| ||| Sbjct 47529 TTGTTA---CCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGA 47473 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 | ||||| | || |||||| || || || ||| | |||| | | Sbjct 47472 ACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGG 47413 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 ||| || || |||||||| |||||| ||| || || ||||| | | || || Sbjct 47412 TGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTA 47353 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | |||||||| | || ||||||||| | | | ||||||||| || | ||| Sbjct 47352 TCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGA 47293 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GG 112001 || ||| ||||| || ||||| | || || |||| ||| ||| | | |||| | Sbjct 47292 GGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA--AGAACTTGCTTG 47235 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 |||| || |||||||||||||||| ||||| || || || ||| || | |||| Sbjct 47234 ACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGATTCCAACAGCGA 47175 Query 112062 CCCGCATGAACATGTACTGTGGG 112084 | ||||||| ||| | ||| ||| Sbjct 47174 CTCGCATGATCATATGCTGCGGG 47152 >seq37 Length=309367 Score = 100 bits (110), Expect = 4e-16 Identities = 333/507 (66%), Gaps = 26/507 (5%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| ||||||||||| || || ||||| ||||| ||||| Sbjct 135291 TAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTTTTGCCGCCAAGGGAGATGTTCTCCATG 135350 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484 ||||| || || || | | || | | | | || | | |||| |||| Sbjct 135351 AAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAAC------GAGG 135404 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | || | || ||||||| ||| | |||||||| |||| ||| Sbjct 135405 AGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGG 135464 Query 122545 TTACATGGGAGTGCGTCC--AAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGA 122602 ||| ||||| || || |||| ||| | | |||||| ||| || || | | | Sbjct 135465 GCACAAGGGAGAGCCTCAGTAAGA--AACTCCTGCTCAATAGAAACGGCATCGGTGATAA 135522 Query 122603 TGGCGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGG 122659 || | ||||| | | | ||| ||| || | || | || ||| || || Sbjct 135523 TGTCCTGGATCATCTGTTTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAGA--CA-GG 135579 Query 122660 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTG 122719 |||| || ||| ||||||||||| || ||||| || || || || |||| ||||| | Sbjct 135580 CAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACCAG 135639 Query 122720 GCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||| || |||||||| | ||| | || | ||| || | ||| |||||||||| Sbjct 135640 GCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCGCTGAAGAAGATA 135698 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAA 122837 ||||| || ||||| |||| ||| || | || |||| || | ||| | | | Sbjct 135699 CCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGTAGAG-TTCTTATCCTGGAT 135757 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTT 122864 |||| || ||||| | ||||||||| Sbjct 135758 CCATCGGATGGCCCAATCCGCCTTCTT 135784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026693129600