Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31]
676 sequences; 36,468,289 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq643 176 5e-39
seq37 129 7e-25
seq546 93.3 5e-14
>seq643
Length=117438
Score = 176 bits (194), Expect = 5e-39
Identities = 569/870 (65%), Gaps = 25/870 (3%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| | ||| ||||||| || || | || || || || || ||||| |||
Sbjct 47152 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 47211
Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338
||||||||||||| || ||||| |||| | | ||| ||| |||| || || |
Sbjct 47212 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCAAGCCCCACTTTA 47269
Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398
||||| || ||||| ||| || || | || ||||||||| | | | ||||||
Sbjct 47270 TTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAG 47329
Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458
||| || | |||||||| | || || | | ||||| || || ||| ||||
Sbjct 47330 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 47389
Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518
|| |||||||| || || ||| | | |||| | ||| || || ||
Sbjct 47390 GGTGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 47449
Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578
|||||| || | ||||| |||| ||||| || || || ||| ||| || || ||
Sbjct 47450 AATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 47509
Query 104579 GTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 104632
|| | || | ||| | ||| || || |||| |||| ||||||||||||
Sbjct 47510 GTTGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGG 47566
Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690
||||| || || | ||||||||||| | || || || ||| | ||||||| |||
Sbjct 47567 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGC 47626
Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750
| | || || || |||| ||||| ||||| || ||||| ||||||||| | || |||
Sbjct 47627 GCT--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGA 47684
Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTG 104809
| ||| | ||| ||||| | || || || || || ||||| || | || |
Sbjct 47685 GAAACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTAC 47743
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869
||||| || ||||| || || ||| |||||||||| ||| ||| || | | || |
Sbjct 47744 GGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGT 47801
Query 104870 GTGCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926
| || ||| | || | | ||| | || ||||| || | || || ||||| || |
Sbjct 47802 CTATCAAGGCT-CAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAAC 47860
Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986
|| | |||||| ||||| || ||| || | |||||||| |||||||| | |||
Sbjct 47861 CCTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACC 47920
Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046
||| || ||||| || || || || ||| | |||| | | |||||| |||
Sbjct 47921 ATCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCT 47980
Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCC 105076
|| || ||||| || || | |||| |||
Sbjct 47981 GTTTGCAACCTTGCCTCCTTGTCTCTGCCC 48010
>seq37
Length=309367
Score = 129 bits (142), Expect = 7e-25
Identities = 351/525 (67%), Gaps = 17/525 (3%)
Strand=Plus/Minus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 94497
||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | |
Sbjct 136096 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 136037
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
| | || | | ||||| |||| || || ||||| |||| ||||| || ||
Sbjct 136036 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 135977
Query 94558 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615
|| ||||||| | | | | | | || | ||||| || |||| | || || |||
Sbjct 135976 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 135919
Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674
|||||||| | ||| |||| ||| | | | || || |||||| |||
Sbjct 135918 GCTTCTATGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 135860
Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734
|| || | || || ||||| ||| || | | ||||| | ||| | | ||
Sbjct 135859 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 135800
Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 94791
|||| || || | |||||| ||||||||||| || ||| | |||| || ||
Sbjct 135799 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 135741
Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851
| |||||||| |||| || | || ||||| |||||||||||||||||| |||
Sbjct 135740 --TACCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 135683
Query 94852 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910
|||| ||| | || | |||||||||||||| || |||||||| ||||| |||| ||
Sbjct 135682 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 135624
Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||||||| || |||||||| ||||| || ||| || |||||
Sbjct 135623 TAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGC 135579
>seq546
Length=71430
Score = 93.3 bits (102), Expect = 5e-14
Identities = 181/262 (69%), Gaps = 9/262 (3%)
Strand=Plus/Plus
Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762
||||||||||||||| || |||| |||||| || || | || | | | || ||
Sbjct 61534 GGCATCAATCTCATCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 61593
Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821
||| ||||||||| | || ||||||||||||||||| || || | | || ||
Sbjct 61594 ATCTCGTACACGCGAAGGTCCAACACCAACAAACATCTCAACGAATTCGGAACCGCTCAC 61653
Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881
|| | |||||| || ||| |||||||| |||| ||| || | |||||||| |
Sbjct 61654 GCTGAA-GAAGGGTACTCCAGACTCACCCGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 61712
Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 9938
|||| || || || | | ||||||||||| |||||||| || || |||| |
Sbjct 61713 TACCGGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCCAGCTTTTCAAACT 61772
Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959
||||||| ||||| |||||
Sbjct 61773 ---TCTCAGGCTGCTTCAAGAA 61791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583255871446240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |