Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq643 176 5e-39 seq37 129 7e-25 seq546 93.3 5e-14 >seq643 Length=117438 Score = 176 bits (194), Expect = 5e-39 Identities = 569/870 (65%), Gaps = 25/870 (3%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||| || || | || || || || || ||||| ||| Sbjct 47152 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 47211 Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| || ||||| |||| | | ||| ||| |||| || || | Sbjct 47212 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCAAGCCCCACTTTA 47269 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || ||||| ||| || || | || ||||||||| | | | |||||| Sbjct 47270 TTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAG 47329 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | |||||||| | || || | | ||||| || || ||| |||| Sbjct 47330 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 47389 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || |||||||| || || ||| | | |||| | ||| || || || Sbjct 47390 GGTGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 47449 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 |||||| || | ||||| |||| ||||| || || || ||| ||| || || || Sbjct 47450 AATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 47509 Query 104579 GTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 104632 || | || | ||| | ||| || || |||| |||| |||||||||||| Sbjct 47510 GTTGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGG 47566 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | ||||||||||| | || || || ||| | ||||||| ||| Sbjct 47567 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGC 47626 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || || || |||| ||||| ||||| || ||||| ||||||||| | || ||| Sbjct 47627 GCT--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGA 47684 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTG 104809 | ||| | ||| ||||| | || || || || || ||||| || | || | Sbjct 47685 GAAACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTAC 47743 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 ||||| || ||||| || || ||| |||||||||| ||| ||| || | | || | Sbjct 47744 GGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGT 47801 Query 104870 GTGCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || ||| | || | | ||| | || ||||| || | || || ||||| || | Sbjct 47802 CTATCAAGGCT-CAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAAC 47860 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| || ||| || | |||||||| |||||||| | ||| Sbjct 47861 CCTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACC 47920 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| || ||||| || || || || ||| | |||| | | |||||| ||| Sbjct 47921 ATCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCT 47980 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCC 105076 || || ||||| || || | |||| ||| Sbjct 47981 GTTTGCAACCTTGCCTCCTTGTCTCTGCCC 48010 >seq37 Length=309367 Score = 129 bits (142), Expect = 7e-25 Identities = 351/525 (67%), Gaps = 17/525 (3%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 94497 ||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | | Sbjct 136096 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 136037 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | | || | | ||||| |||| || || ||||| |||| ||||| || || Sbjct 136036 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 135977 Query 94558 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615 || ||||||| | | | | | | || | ||||| || |||| | || || ||| Sbjct 135976 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 135919 Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674 |||||||| | ||| |||| ||| | | | || || |||||| ||| Sbjct 135918 GCTTCTATGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 135860 Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 || || | || || ||||| ||| || | | ||||| | ||| | | || Sbjct 135859 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 135800 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 94791 |||| || || | |||||| ||||||||||| || ||| | |||| || || Sbjct 135799 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 135741 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 | |||||||| |||| || | || ||||| |||||||||||||||||| ||| Sbjct 135740 --TACCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 135683 Query 94852 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 |||| ||| | || | |||||||||||||| || |||||||| ||||| |||| || Sbjct 135682 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 135624 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || |||||||| ||||| || ||| || ||||| Sbjct 135623 TAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGC 135579 >seq546 Length=71430 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/262 (69%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||||||||||||||| || |||| |||||| || || | || | | | || || Sbjct 61534 GGCATCAATCTCATCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 61593 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 ||| ||||||||| | || ||||||||||||||||| || || | | || || Sbjct 61594 ATCTCGTACACGCGAAGGTCCAACACCAACAAACATCTCAACGAATTCGGAACCGCTCAC 61653 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 || | |||||| || ||| |||||||| |||| ||| || | |||||||| | Sbjct 61654 GCTGAA-GAAGGGTACTCCAGACTCACCCGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 61712 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 9938 |||| || || || | | ||||||||||| |||||||| || || |||| | Sbjct 61713 TACCGGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCCAGCTTTTCAAACT 61772 Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959 ||||||| ||||| ||||| Sbjct 61773 ---TCTCAGGCTGCTTCAAGAA 61791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255871446240