Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31]
676 sequences; 36,468,289 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq393 156 1e-32
seq312 114 4e-20
seq22 109 2e-18
seq433 105 2e-17
>seq393
Length=99189
Score = 156 bits (172), Expect = 1e-32
Identities = 440/671 (66%), Gaps = 15/671 (2%)
Strand=Plus/Minus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || |||| ||| | || |||||
Sbjct 7359 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 7300
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| ||||||||||| | || || || || | || || || | || ||
Sbjct 7299 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 7240
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435
|| || || || |||||| | || ||| | ||||| | |||| || ||
Sbjct 7239 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGG--TC----CAG 7186
Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495
| ||| | || || || || || || | | | | ||| | || || || | ||
Sbjct 7185 GCCGATATGAAGCACTTCCCCTTCACAATCAT-CGACAAGGC--TGGCAAGCCCGTCATC 7129
Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555
|||||||| | || ||||| | || || ||||| || || || | ||| |
Sbjct 7128 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCGCCATGATC 7069
Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615
| || ||| || | |||||| | || | ||||| || || | | || |||
Sbjct 7068 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCCGTT 7009
Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675
| || || || ||||| || || || | |||||| || || || ||||| || |
Sbjct 7008 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 6949
Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735
|| || || | || ||||| |||| || || || || || ||||| || ||||| ||
Sbjct 6948 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 6889
Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795
|| ||||| || | | ||| || || | || || || ||| | |||||||||
Sbjct 6888 GGTCTTGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 6829
Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855
||||| |||||||| || || || |||| || || || || || || || | |||||
Sbjct 6828 ACTTTCGATGTATCTCTCCTTACCATTGAGGAAGGTATCTTCGAGGTCAAGTCTACTGCC 6769
Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915
|||||||| || | ||||| |||||||| || || ||||||||| || || |||||
Sbjct 6768 GGTGATACTCACTTGGGTGGTGAAGATTTCGACAACCGTCTCGTTAACCACTTCGTTAAC 6709
Query 349916 GAATTTAAGCG 349926
|| || || ||
Sbjct 6708 GAGTTCAAACG 6698
>seq312
Length=59172
Score = 114 bits (126), Expect = 4e-20
Identities = 179/255 (70%), Gaps = 6/255 (2%)
Strand=Plus/Minus
Query 378222 TCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACG 378281
|||||| ||| |||||||||| | ||| || || ||||||||||| | ||| | ||
Sbjct 36508 TCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATGAGACCTTCTCG 36449
Query 378282 ACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTC 378341
|||| |||| || |||||||| || || |||| ||||| |||| | | || ||||
Sbjct 36448 ACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGTAAGACCACGTAGGTAAGAGTTCTC 36389
Query 378342 AATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATT 378401
| || || | || | || |||| ||||| || || ||||||| | |||||||
Sbjct 36388 GACGAAACCACGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATA 36329
Query 378402 CTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAAC 378458
|| || ||| | ||||| || ||||| || || | ||||||| |||| ||||
Sbjct 36328 CTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGATTTGTTGACCGACAAGCGCAG---T 36272
Query 378459 CATTTGAGCAATATT 378473
|||||| | ||| ||
Sbjct 36271 CATTTGCGAAATGTT 36257
Score = 91.5 bits (100), Expect = 4e-13
Identities = 110/149 (74%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505
||||||| | || |||||||| | || || ||| || || | |||||||| ||
Sbjct 37302 ATTTCTTTGAGACGAGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAA 37246
Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565
||||| || || || || | ||||| | ||||||||||| ||||| || || | |||
Sbjct 37245 TGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACA 37186
Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594
||||||||||| ||||| ||||| | |||
Sbjct 37185 CCAACCATTTCACCAGGGTTGACGAAAGC 37157
>seq22
Length=419152
Score = 109 bits (120), Expect = 2e-18
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || || || ||||| ||||| || || || || |
Sbjct 75131 TTTGCATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGT 75190
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || || || || || || || || | || |||||||
Sbjct 75191 AGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGAT 75250
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
||||||| || || || || ||||| || || | || ||||| || || | || ||||
Sbjct 75251 CAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATG 75310
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || | ||||| || || || || || || || || |||||
Sbjct 75311 ACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 75365
Score = 96.9 bits (106), Expect = 1e-14
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | || || || ||||| || || || || || || || || || ||
Sbjct 74857 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 74916
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| ||||| || || || || || || || || || || | || ||||||||||||||
Sbjct 74917 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 74976
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
|| || || || ||||| || || | || ||||| || || | || |||| || ||
Sbjct 74977 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACC 75036
Query 140691 TCAAGTGTAACTGTCTTTCCGGT 140713
||||| |||| ||||| |||||
Sbjct 75037 TCAAGGGTAATAGTCTTGCCGGT 75059
>seq433
Length=46257
Score = 105 bits (116), Expect = 2e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | ||||| || ||||| || || || || || ||
Sbjct 40687 CATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 40746
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || ||||| || || || || ||||||||||| || || ||||| || ||
Sbjct 40747 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 40806
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || ||||| | || || | ||
Sbjct 40807 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 40866
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || |||||||||||
Sbjct 40867 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 40917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515241276002828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |