Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31]
676 sequences; 36,468,289 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq643 226 3e-54
seq177 152 6e-32
>seq643
Length=117438
Score = 226 bits (250), Expect = 3e-54
Identities = 419/608 (69%), Gaps = 10/608 (2%)
Strand=Plus/Plus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|| ||| || | ||||||| ||||| | || ||| |||||||| |||||||
Sbjct 47153 CCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGTC 47212
Query 53240 CGTGAGACGTACGACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGT 53297
||||| ||| || | ||| ||| |||| ||| || || || | || || | |
Sbjct 47213 TTGGAGACATACAACCTCATGT--CAAGCAAGTTCTTCACTCATGCAAGCCCCACTTTAT 47270
Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357
||||||| ||||| || |||||| | || |||||||| || | |||||||| |
Sbjct 47271 TCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAGG 47330
Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417
|| || || || |||||||| || |||||| |||||| || |||||| | | |
Sbjct 47331 ACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTG 47390
Query 53418 GTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475
||||||| || | || | |||| ||||||| | ||| | ||| || ||
Sbjct 47391 GTGGTATTGGCTTGAACGCCCACCGAA--TCCGTGCCACTGGCTCTTACATCGCCGGTAC 47448
Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535
|| || || | || ||||| || ||||| || || ||||||||||| || || ||
Sbjct 47449 CAATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 47508
Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
||| ||||||||||| ||||| || | |||||||||||||| ||||| |||||
Sbjct 47509 CGTTGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCA 47568
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
||||||| | | ||||| || || || || |||||| ||| | || ||| | |||
Sbjct 47569 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 47628
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
||||||||||| |||||| ||||| || || || |||||| | || |||| |
Sbjct 47629 TCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGAAA 47688
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTG 53774
|| || ||| || |||||||| ||||| ||||| |||| | | | || ||||||||
Sbjct 47689 CGGCGAATGGACTCTCATGTGCCCTAACGAATGCCCTGGCCTTGCTGACTG-CTACGGTG 47747
Query 53775 AGGAGTTT 53782
| || |||
Sbjct 47748 ACGAATTT 47755
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAGTCTGATTGACATGAGT 55786
|||||| | ||| ||| |||||||||||| | ||| | || || | | ||| |
Sbjct 48684 TCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG-TGCAGATGGCT 48742
Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846
||||| |||||||| | ||| || ||||| |||||||| ||||| |||| || | |||
Sbjct 48743 GCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGGACCCT 48802
Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906
| ||| |||| | | | |||||||| || |||||| || |||||||| ||
Sbjct 48803 ACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 48862
Query 55907 ATGTACTATCTGCGGAC 55923
|||||||| || || ||
Sbjct 48863 ATGTACTACCTCCGTAC 48879
>seq177
Length=148139
Score = 152 bits (168), Expect = 6e-32
Identities = 192/264 (73%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357
||| || |||||| ||||||||| || |||||||| ||||| ||||| || | |||
Sbjct 24021 TAGTCGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACC 23962
Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417
||| | |||||| || |||| | ||| | |||||| | |||||| ||||| ||||| |
Sbjct 23961 GAAGTTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAG 23902
Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477
| | ||| || |||||| | ||||| ||||| || |||||||| || | |||
Sbjct 23901 GCCAATAATGGTCTGTTGGAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACAC 23842
Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537
|| || |||| | | | |||||| ||||| ||| ||| |||||| ||| || ||
Sbjct 23841 ATAACCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTA 23782
Query 117538 AATCACCTTGCGCTGACTTGGCTT 117561
|| ||||||||||||| |||||
Sbjct 23781 GATGACCTTGCGCTGACCGGGCTT 23758
Score = 120 bits (132), Expect = 3e-22
Identities = 206/299 (69%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|| ||||| |||| || | ||||| ||||| |||||||| || || | || ||
Sbjct 24017 CGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 23958
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| |||| ||| || ||| ||||| |||||| | ||||||||| |||||||| |
Sbjct 23957 TTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAGGCCA 23898
Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205
| ||| || || || | |||||||||||| || |||||||| || | | ||
Sbjct 23897 ATAATGGTCTGTTGGAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACACATAA 23838
Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265
|| ||||| | | |||||| |||| | ||| ||| |||||| || ||||| ||
Sbjct 23837 CCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTAGATG 23778
Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
||||||||||| || || || ||||||| || ||||| || ||| || ||||
Sbjct 23777 ACCTTGCGCTGACCGGGCTTGAATCCGTCCAGAACAGATGGAATAGATCGCATGTTGTC 23719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547211376024800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |