Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq433 163 6e-35 seq22 154 3e-32 seq403 147 5e-30 seq37 120 6e-22 seq380 86.0 1e-11 seq643 84.2 5e-11 >seq433 Length=46257 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || |||||||||||||| Sbjct 40690 ACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 40749 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || ||||| || Sbjct 40750 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 40809 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || ||| | || || ||||| |||| || || Sbjct 40810 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 40869 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 40870 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 40917 >seq22 Length=419152 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || |||||||||||||| | Sbjct 75138 ACCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 75197 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| || ||||| || || || ||| || Sbjct 75198 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGG 75257 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| || | ||||| Sbjct 75258 GATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGAC 75317 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 75318 CTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 75365 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| ||||| || | || ||| || |||||||||||||| | Sbjct 74857 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 74916 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || ||||| || ||||| || || || ||| || Sbjct 74917 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 74976 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || || | ||||||||||| || | ||||| Sbjct 74977 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACC 75036 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || || || || ||||| || ||||| ||||| |||| Sbjct 75037 TCAAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGA 75073 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| || ||||| || || || ||| || || ||||||||||| |||||||| | Sbjct 75439 CCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGAC 75498 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | |||||||| || || | || || ||||| || || ||||| || ||||| Sbjct 75499 TTCACGTTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAG 75558 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 75559 GTCTTGACGAAGATCTGCAT 75578 >seq403 Length=53939 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || ||||| |||||| Sbjct 265 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 206 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || || || || || ||||||||||| |||||||| | || || | ||| Sbjct 205 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 146 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||||| ||||| ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 145 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 87 >seq37 Length=309367 Score = 120 bits (132), Expect = 6e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 230167 TCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTA 230226 |||| || | ||| | | ||| ||||||| || || ||| | ||||| || Sbjct 135519 TCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGC 135460 Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286 |||||||||| | | |||||| ||| || ||||||||||| ||||||||| | ||| Sbjct 135459 TCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCG 135400 Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346 | || || || ||||||| ||||| || |||| ||||| |||| || |||||| || Sbjct 135399 TTGCTCTCGGCAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACA 135340 Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406 | || || || ||||| ||||||||||| ||||| || || || || | | ||| Sbjct 135339 TCTCCCTTGGCGGCAAAACCAACTTCTTCGAGAAGCGCGTTGCTGACTACCAGAAGGCCG 135280 Query 230407 GTGT 230410 |||| Sbjct 135279 GTGT 135276 >seq380 Length=135295 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710 |||| |||| | | || ||||| |||| ||||| || |||| | | |||||||| Sbjct 3559 GTGAGTAATGATGATGACACCACCCTCGAACTTCTTCAGGGCCTTGGAAAGAGCACCGAG 3500 Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770 | || ||||| | | ||||||| ||||| ||||||||||| | |||||| | ||||| Sbjct 3499 AGAGTCACGGTCAAGATAGTTGGTAGGCTCGTCAAGAACGATAAGATGGGGTCGCTGCCA 3440 Query 315771 TAGAGC-GGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAG 315829 ||||| ||| | | || ||| | || ||||| ||||| ||||| || |||| Sbjct 3439 -AGAGCAAGCGGCAAGGACAGTCTTGACACGCTGACCACCGGACAGACCACGCATACGAG 3381 Query 315830 AATGAG 315835 | |||| Sbjct 3380 AGTGAG 3375 >seq643 Length=117438 Score = 84.2 bits (92), Expect = 5e-11 Identities = 188/280 (67%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 299559 CATCGACGTCATGGCATACCCCATCAAAGAAGCGCAGA-CATCGAACATGCTGCGCCGCC 299617 ||||||||||| ||||| || |||| || | | || | ||||||| | ||| | Sbjct 48097 CATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGC-AACATGCGTCACCGAC 48155 Query 299618 CCATCGGCGTGGGGGTACAAGGACTTCAGGATGTGTTCTTCAAACTGAAGCTCCCATTTG 299677 |||| || | || || ||||| ||| |||| ||| | || | || |||| Sbjct 48156 CCATTGGTCTTGGTGTGCAAGGTCTTGCTGATGCCTTCCTTGCCCTCCGCATGCCCTTTG 48215 Query 299678 ACTCTCCGGAGGCCAGGGATCTTAACCGGGAAATCTTCGAGCATATCTACTACGCTGCCG 299737 | ||||| ||||| | || || ||| | ||||||||||| |||||| |||||||| Sbjct 48216 AGTCTCCTGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCACGCTGCCC 48275 Query 299738 TTGAAGCGTCGGTAGAACTCGCGGAAATCCACGGGCCTCACCCCACCTTCGAAGGGTCTC 299797 || |||| || ||||||| | | || || || |||||||| | || || | Sbjct 48276 TTACTACGTCTGTGCAACTCGCTAAGGAGGAAGGTCCCTACTCCACCTTCAAGGGCTCCC 48335 Query 299798 CTGCAAGTAAGGGCATCCTCCAATACCACTTGTGGGATGT 299837 |||| | |||| || ||||| | | || ||||| |||| Sbjct 48336 CTGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGT 48375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046730133930104