Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31]
676 sequences; 36,468,289 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq22 143 2e-29
seq433 141 7e-29
seq403 113 3e-20
>seq22
Length=419152
Score = 143 bits (158), Expect = 2e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || |||||| ||||||||||| |||| ||| ||| | || ||
Sbjct 75157 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 75216
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || ||||| ||||||||||| | ||| | || ||||| |||
Sbjct 75217 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGG 75276
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||||| | | |||||||||| || || ||||| | || || |||||
Sbjct 75277 ATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTG 75336
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||||||||| ||||||||||||||
Sbjct 75337 CCTGTGAGGGTCTTGACGAAGATTTGCAT 75365
Score = 123 bits (136), Expect = 2e-23
Identities = 149/201 (74%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||||||||| || ||||| ||||||||||| |||| ||| || |||| ||
Sbjct 74875 ACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCG 74934
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || ||||| ||||||||||| | ||| | ||| ||||| |||
Sbjct 74935 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 74994
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | || ||||||| || || ||||| | ||||| ||||
Sbjct 74995 ATCTTGGACTTGACATTGT--CGATAGTGTCGGATGACTCGACCTCAAGGGTAATAGTCT 75052
Query 44307 TTCCCGTGAGGGTCTTCACGA 44327
| || || | |||||| ||||
Sbjct 75053 TGCCGGTCAAGGTCTTGACGA 75073
>seq433
Length=46257
Score = 141 bits (156), Expect = 7e-29
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| |||||| ||||||||||| ||| || ||| | || ||
Sbjct 40709 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 40768
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||| | |||||||| || | || | ||| ||||| |||
Sbjct 40769 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 40828
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | |||||||||| || |||||||| | || ||||||||
Sbjct 40829 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 40888
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|||||||||||||| ||||| || |||||||||
Sbjct 40889 CCCGTGAGGGTCTTGACGAAAATCTGCATGATG 40921
>seq403
Length=53939
Score = 113 bits (124), Expect = 3e-20
Identities = 136/183 (74%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| || | || || |||||||| ||||| ||||
Sbjct 267 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 208
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| ||||||||||| | || | || ||||| ||| ||||| ||| || |||
Sbjct 207 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 148
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| |||||||| | || || ||||| | || || ||||| ||||| |||||||||||
Sbjct 147 --CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 90
Query 44326 GAA 44328
|||
Sbjct 89 GAA 87
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359987434129092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |