Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31]
287 sequences; 36,399,802 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq119 228 8e-55
seq272 140 3e-28
seq237 129 6e-25
seq267 102 8e-17
>seq119
Length=1526710
Score = 228 bits (252), Expect = 8e-55
Identities = 396/564 (70%), Gaps = 15/564 (3%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||| | |||||| | || ||
Sbjct 630500 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 630441
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACA-ACGAGCGCCATTTCATCA 116750
|||||||| | | | ||||||| | || |||| | || |||||| | ||||||
Sbjct 630440 TCCAAGGATCTCCA-CGACTGGAACAACCGATTGA-CTTCAGACGAGCAATACTTCATCT 630383
Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810
||| | || || || ||||| ||| ||||||||||||||| |||||||| || ||||
Sbjct 630382 CCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGAGC 630323
Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
| ||| ||||| ||| | ||||||| || |||||||| || || |||||| |
Sbjct 630322 GATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGA 630263
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTT 116927
|||||||| | ||||| |||| || || ||||||||| || ||| | | | ||
Sbjct 630262 TGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTG 630203
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| | | | | | | | || |||||| | || || || || ||| || | ||||||
Sbjct 630202 CCCA-GCGTACATAC--CTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGG 630146
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTG 117046
| || ||||| | || |||||| | || || | | |||| | |||| || ||
Sbjct 630145 CGGATTGGGCCATCCGATGGATC-CAGGATAAGAACTCTACCTTTGCTCAGCGTCTTGTT 630087
Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106
|| || || ||||| ||||| ||||||| || || || |||| || ||||||
Sbjct 630086 GCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTC 630027
Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166
||||| || ||||||||||| || |||| || ||||||||||| || | || |||
Sbjct 630026 AAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGATGAG 629967
Query 117167 GGTCTGCATTGCGACTTTGCCTGT 117190
||||| || |||||||||||||
Sbjct 629966 GGTCTTCACACCGACTTTGCCTGT 629943
>seq272
Length=530880
Score = 140 bits (154), Expect = 3e-28
Identities = 155/204 (76%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || || |||||| | || || || | ||
Sbjct 332909 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 332850
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || || | ||||| ||||| |||||| |||||||
Sbjct 332849 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 332791
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||| |||| || || || ||||| || || | |||||||| | |||||||||
Sbjct 332790 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 332731
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| |||| || ||
Sbjct 332730 CATCCAGAAGGAGTCCACCCTTCA 332707
>seq237
Length=369279
Score = 129 bits (142), Expect = 6e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| | | |||| | |
Sbjct 287369 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCATCGGACACCATC 287428
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| |||| ||||| ||| |
Sbjct 287429 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 287488
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | || |||||| |||||||||||||||||||
Sbjct 287489 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 287548
Query 40879 G 40879
|
Sbjct 287549 G 287549
>seq267
Length=334782
Score = 102 bits (112), Expect = 8e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| || || ||| |||| || || | |
Sbjct 143546 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCT 143487
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| | ||| || || | ||||| ||||||||||| | || ||
Sbjct 143486 GATACTATCGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCA 143428
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||| | || | ||| ||||| ||||| || || | ||||||||| |||||||||
Sbjct 143427 GCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 143368
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 143367 CATCCAGAAGGAGTCGACTCTCCACCTCGT 143338
Score = 93.3 bits (102), Expect = 4e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || | || ||||| || || ||| | || ||||| | |||||| |
Sbjct 143254 TCGTCAAGACCTTGACCGGCAAGACTATTACCCTTGAGGTCGAGTCATCCGACACTATCG 143195
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || || | ||||| ||||| ||||| | || ||||| ||| | |
Sbjct 143194 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGA 143135
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
| | ||| ||||| ||||| || |||| || |||||| ||||||||||||||||||||
Sbjct 143134 TTTTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAGG 143075
Query 40880 AGGCCACGCTGCATCTAGT 40898
| | || || || || ||
Sbjct 143074 AATCAACCCTTCACCTGGT 143056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217351651120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |