Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 107 4e-18 seq195 95.1 2e-14 >seq1 Length=273682 Score = 107 bits (118), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || |||||||| || |||||||||||||||||||| | | || || || || | Sbjct 168504 AGTTGGATCTCTGTCTGGAGGTTGGAAGATGAAGCTGGCTTTGGCCCGTGCTATGCTGCA 168563 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||| || |||||||| || ||||||||||| || ||||| | ||| ||||| | || Sbjct 168564 GCGCGCTGATGTCCTTCTTCTTGATGAGCCTACTAACCATCTTGACGTTGCCAACATTGC 168623 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | ||||| | | || | || ||||| |||||| Sbjct 168624 ATGGCTCGAGAACTACCT--CAAGTCTCACCCCGACATTACCAGTCTTATTGTTTCTCAC 168681 Query 279873 GACTCTGGCTTC 279884 |||||||||||| Sbjct 168682 GACTCTGGCTTC 168693 >seq195 Length=674302 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 558810 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 558869 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| |||||||| || | Sbjct 558870 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGTGGTCCCAACGGTTCC 558929 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 558930 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 558988 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 558989 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTCCGCT 559034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833020451367