Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq272 170 4e-37 seq267 149 1e-30 seq237 138 2e-27 seq195 105 1e-17 >seq272 Length=530880 Score = 170 bits (188), Expect = 4e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || |||||||| || |||||||| || ||| Sbjct 332683 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 332742 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || || Sbjct 332743 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 332802 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 332803 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 332862 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || | |||||| || || |||||||||||||||||||| |||||||| |||| Sbjct 332863 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATGC 332914 >seq267 Length=334782 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| || |||||| Sbjct 143320 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 143379 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | || || || || || || Sbjct 143380 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 143439 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| ||| ||||| || || | ||| || || Sbjct 143440 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATAGTATCAGATGACTCAACC 143499 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || || | |||||||||||| |||||||| Sbjct 143500 TCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 143546 Score = 127 bits (140), Expect = 4e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| || | |||| ||| || || || || || |||||||| || ||||| Sbjct 143037 TCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGA 143096 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || || || | |||||| |||||||| || | || || || || || || Sbjct 143097 GAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGG 143156 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || |||||||| || ||||| | |||||| ||||| ||||| | ||| || || Sbjct 143157 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGAC 143216 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||| || || || || || | ||||||||||| Sbjct 143217 CTCAAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGA 143254 >seq237 Length=369279 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 287547 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 287488 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || || || || || ||||| |||||||| || ||||| | |||||| ||| Sbjct 287487 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 287428 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | ||| || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 287427 ATGGTGTCCGATGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 287369 >seq195 Length=674302 Score = 105 bits (116), Expect = 1e-17 Identities = 657/1036 (63%), Gaps = 40/1036 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| |||| || ||||| || || || ||||| Sbjct 559819 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCAAAAGCG 559760 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| ||||| | | ||| | || || Sbjct 559759 TGCTGCTTAATGTAGGCGATACGGATGTTCTCATGCTGGTAGATCTCACCCTGGGTAGGG 559700 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || |||||||| ||||| || |||| |||||| ||||| |||||||| || Sbjct 559699 ATAAGCTCACCAGTGAGGACGTTGATCAGAGTAGACTTGCCGGCACCGTTGGGGCCGATA 559640 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTG---CGAGTTCACGTTG--CTGAAGATCTCAG 225215 ||| |||| || || || | ||| ||| | || || ||| | | || Sbjct 559639 ACGGCAATACGAGAGCCCAGAGAGCACTGGAAGGAGATGTCGCTGATCTGGGGCTTGGAG 559580 Query 225216 G-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTCC 225268 | |||| |||| |||| || | |||| || ||||| | || Sbjct 559579 GTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAG------AATGGCCTTGGCC 559529 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328 |||| | | |||||| ||||| |||||||||||||| ||| | || | | || Sbjct 559528 TTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCGATCTCGGACTCA 559469 Query 225329 TTCAGGTCGTAGTAAGATGCAGC-CTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCC 225387 || |||||||| || || |||| || || |||||||||| |||||| || Sbjct 559468 CCAAGCTCGTAGTAGGACTTGGCGGAGGGGTTGC-GGGCGACGAAAGCAGCCAGGTTACC 559410 Query 225388 GAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGT 225446 || | ||||||||| || |||||| ||||| || ||| | ||| || || Sbjct 559409 CTTGTAACGCTTGAGCTTGA--ATC-GCTCGTAGTGAACGATGTGCTG-GCAGACGTTGT 559354 Query 225447 CAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGG 225505 ||||||| || |||||||| || ||||||||||| | || | || | ||||||| Sbjct 559353 CAAGGAAACCGGAGTCGTGAGAGACAATGATGGAGGTGCAAG--CG--GAGTTCTTGAGG 559298 Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | | |||||| ||||| | || |||| ||||| ||||| || || || | | Sbjct 559297 TACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCATCAAGCAAC 559238 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || || || | | | || || || || |||| |||||||| ||||| || || Sbjct 559237 AGAATATCGGGAGCCTCGAAGACAGCACGGCACAGAGCAAGCTTCATCTTCCAACCACCA 559178 Query 225626 GACAGGGAGCCGAT-TGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTC---CAGGAG 225681 || |||| || ||| | | | | || || ||| ||| ||| |||| || | Sbjct 559177 GAGAGGGCGCTGATCTCACCCTTAACCATTTGC-TCGGTAAAACCGAACTCGTTGAGCTG 559119 Query 225682 CGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTA 225741 | ||| || | || || | | || | |||| | | | | | | | Sbjct 559118 CTTCTCGACATCAGCCTGGGTGGTGGTGACACCGGCCTCCTCAAGCTTCTTCATGGTCCA 559059 Query 225742 ATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCG 225801 ||| |||||| || | ||| | ||| | |||||| || ||| | || ||| Sbjct 559058 GTCAATGGTGGTCATCTCAGTATCAGCGGAGTCCAAGTCGTGCTCGACGAAGACAGTCTT 558999 Query 225802 GAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGG 225860 || || | || | |||||| ||||| | ||| | || || || || | |||| Sbjct 558998 GACCTCGTCCTGC-TTGGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGG 558940 Query 225861 TACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGA 225920 | ||| || | ||||||||||| || |||||| | | || ||||||| || Sbjct 558939 TGGACTTTCCGGAACCGTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGGA 558880 Query 225921 GGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACA 225980 || | || ||| || || |||||| |||| |||||||| ||||| || | ||| | Sbjct 558879 GGTGAGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAAA 558820 Query 225981 GGTCCTCACCCTCCTC 225996 | |||||||||||||| Sbjct 558819 GATCCTCACCCTCCTC 558804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619093679640