Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq119 298 1e-75 seq180 297 4e-75 >seq119 Length=1526710 Score = 298 bits (330), Expect = 1e-75 Identities = 589/860 (68%), Gaps = 31/860 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||| || |||||||| || || Sbjct 630500 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 630441 Query 42360 GCCAAGGACACGGCCGGCTGG-------GAGTCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 ||||||| || |||| || | ||| | ||| ||| | | ||| | Sbjct 630440 TCCAAGGATCTCCACGACTGGAACAACCGATTGACT---TCAGA-CGAGCAATACTTCAT 630385 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 | |||| || || |||||||| ||||| |||||||| ||||||||||| || | Sbjct 630384 CTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGA 630325 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 | |||| ||||| ||| | ||||| || |||||||| || |||||||| Sbjct 630324 GCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCAT 630265 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || |||||| | ||||| || ||| || || || | || |||||| ||| || Sbjct 630264 GATGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCC 630205 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||||| || ||||| ||| | || || || || |||||| |||||||| Sbjct 630204 TGCCCAGCGTACATACCTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGGC 630145 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 ||| ||||| || |||||| || | || | || || | || | || || || Sbjct 630144 GGATTGGGCCATCCGATGGATCCAGGATAAGAACTCTACCTTTGCTCAGCGTCTTGTTGC 630085 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| | ||||| ||||| ||||||||| || ||||| || ||||||||||||||||| Sbjct 630084 TTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAA 630025 Query 42773 GCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || || || ||||| || || | ||| || ||||| ||||| | || |||| Sbjct 630024 GAAGCGTGGCCTC-ATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGATGAGG 629966 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCG 42890 | || || | ||||||||||| ||||| ||| |||||| ||| || ||| | Sbjct 629965 GTCTTCACACCGACTTTGCCTGTCTCCTCCACTC---TCACCTCAAGGGACGTGCCAGC- 629910 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 || || | ||| || ||| ||||| || ||||| || ||| ||||||| || || Sbjct 629909 AAACAGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACT 629850 Query 42951 CAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | || ||| ||| ||||| ||||||||||| | |||||||| |||||||| | Sbjct 629849 GAGGCTCT-CCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGA 629791 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC----AGCCGCCTCTACAACACGC 43065 | |||||| || | |||||| | | |||| || | | ||||| | Sbjct 629790 ATTCGTCGCTGATCGTCTCCT------CGTTGCTCTCGNNGAGAAG-GTGTACAAGTCCA 629738 Query 43066 CGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125 | ||| |||||||| |||||||||||||| | | ||||| |||||||| ||||||| Sbjct 629737 CCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAAACCAACTTCTTCGAGA 629678 Query 43126 AGCGCGTCGCCGACTACCAG 43145 ||||||| || ||||||||| Sbjct 629677 AGCGCGTTGCTGACTACCAG 629658 >seq180 Length=606450 Score = 297 bits (328), Expect = 4e-75 Identities = 891/1367 (65%), Gaps = 59/1367 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||| ||||||| |||| | || || Sbjct 291226 GTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGG 291167 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || || ||||||| || ||||||| || || || || ||||| || | || Sbjct 291166 CTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAAGTACTGGCGGTAGGCATAGGAGCAAC 291107 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||||||||||| | | ||||| ||| || || ||| | ||||||||| Sbjct 291106 GAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTCTCGGAGGGGTTCCCAGTCCCA 291047 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | | ||||| | | | || ||||||||| ||||| || | |||| Sbjct 291046 AAGGTC--AGAGGGCTTGACATT-------CCACATGTCGAACTGGAGAATACCCTCAGA 290996 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCT 244388 | | ||| ||||| | |||| | ||||||||| || || || || | |||| | Sbjct 290995 GGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTAGCGAGTTGCACAGACGT 290936 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 || ||||| |||| |||||||||||||||||| |||||||| || || |||| Sbjct 290935 AGTA-AGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGAGCCT--- 290880 Query 244449 CGCAGGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 |||| || |||| |||| | | |||| | || || || || ||||| || Sbjct 290879 --CAGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCAAGACCTTGCACACC 290822 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 | || ||||||| ||| ||| ||||| | || || | || ||||| ||| Sbjct 290821 AAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGACAGGGTAGTGGTT 290762 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623 | ||||||| | |||||| | |||||| | | | ||| ||| |||| || Sbjct 290761 GACGTCGATGATCTTGTTCAAATTGCGGACAACGACTTGAGTGACCTCGTGCAGCTTCTT 290702 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC--- 244680 |||||||| | | | ||| || | || ||| || |||||| Sbjct 290701 GAAGTCGTA---GCAAGCATCTTCATAGTTGATGA--------AA------GAGGGCAGA 290659 Query 244681 GAC--GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCG 244738 ||| | ||| |||||||| || || ||||| || | | | ||| | | ||||| Sbjct 290658 GACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCA 290599 Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 ||||| ||||| || |||||| || |||| || || || |||| |||||| Sbjct 290598 GTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAG 290539 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858 ||||||||||||||||| || |||||||| |||||| | || | | || | Sbjct 290538 TGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTAC 290479 Query 244859 CAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTAC 244918 || || | | |||||||| | | ||||| |||| |||||| |||||| |||| Sbjct 290478 CAAAGCTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTAC 290419 Query 244919 AGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATG 244978 || ||||| || ||| || || || | ||||| ||||| ||||||||| Sbjct 290418 AGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATG 290359 Query 244979 AGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCC 245038 ||| |||| |||||| || ||| | || |||||| || || |||||||| || || Sbjct 290358 AGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCT 290299 Query 245039 TGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAA 245097 ||| ||||| | | | ||| ||| || ||| ||||| | || || | || Sbjct 290298 AAGAACAGGTCACGAGCGCGGACCTCCTCCTTACC-GTGATTCTTTCGGAGATCAAGGAA 290240 Query 245098 GTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTT 245157 || ||||||||| ||||||| ||||| | ||||| |||| ||| || || |||||||| Sbjct 290239 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 290180 Query 245158 GCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTA 245213 || ||||||| || | | ||||| |||||| | ||||| | || || | Sbjct 290179 ACCACCCTGGT----CAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGA 290124 Query 245214 TGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGC 245270 | ||||| || || ||||| || |||||| | ||| || | | || ||| | Sbjct 290123 TACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGG 290064 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 | | || ||| | || || || |||||| || | ||| || |||||| ||| | Sbjct 290063 CGTT---CAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTAT 290007 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | || || || ||||||||| |||||| | | || ||||| || || ||||| | Sbjct 290006 CGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAG 289947 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||| || | | | |||||| | ||||||||| || || || ||| Sbjct 289946 GCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAG 289900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335812183120