Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq272 118 1e-21 seq267 114 1e-20 seq237 113 4e-20 seq119 86.0 6e-12 >seq272 Length=530880 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| |||| | Sbjct 332683 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 332742 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||||||||| || || || Sbjct 332743 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 332802 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| || | |||||| | | ||| || Sbjct 332803 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAAGACTCCAC 332861 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||| || || || || || || || |||||||||||| Sbjct 332862 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 332910 >seq267 Length=334782 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| ||| || ||||| || || Sbjct 143350 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 143409 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||||||||||||| ||||| ||||||||||||||| ||| || ||| Sbjct 143410 GCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC 143469 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| || || | ||| || |||| ||| | || |||||||||| || Sbjct 143470 ACGTTG-TCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGT 143528 Query 127096 TTTTACAAAAATCTGCATGG 127115 || || || |||||||||| Sbjct 143529 CTTGACGAAGATCTGCATGG 143548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || | |||| || | || || || || || || ||||| Sbjct 143032 TACTG-TCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTA 143090 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||| | || ||| || || ||||| || || ||| | ||||||||||||||||| Sbjct 143091 GTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATC 143150 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 ||||| || |||||||||||| ||| || ||||| | |||| ||||| | Sbjct 143151 AGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGA 143210 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 |||||| || | ||| | || |||||||||| Sbjct 143211 CTCGACCTCAAGGGTAATAGTCTTGCCGGTCA 143242 >seq237 Length=369279 Score = 113 bits (124), Expect = 4e-20 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || ||| ||||||||||||||||||| || || ||||||||||| Sbjct 287515 ATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTT 287456 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| |||||| |||| ||| | Sbjct 287455 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGATGACTCGACCTCGAGGGTGAT 287396 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 || ||||| ||||| || || || ||| ||| ||||| Sbjct 287395 GGTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 287359 >seq119 Length=1526710 Score = 86.0 bits (94), Expect = 6e-12 Identities = 233/355 (66%), Gaps = 22/355 (6%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 ||||| || || | ||| |||||||| || || | || || || || |||||| || Sbjct 630011 ATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGAC 629952 Query 47283 TTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGC 47342 |||||||||||| | |||| || | | ||| ||||||||| | ||| Sbjct 629951 TTTGCCTGTCTCCTC-----CACTC---TC-ACCTCAAG--GGACGTGCCAGCAAACAGA 629903 Query 47343 --------GACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTC 47394 ||||| | |||| ||||| | |||||| ||||||| | | ||||||| Sbjct 629902 TGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTC 629843 Query 47395 TGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCG 47454 | || | | | || |||||| | | | |||| ||||||||||||| |||| Sbjct 629842 TCCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAATTCGTCG 629783 Query 47455 CCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCG 47514 | || || || |||||| || | ||| | ||| | || || || |||| Sbjct 629782 CTGATCGTCTCCTCGTTGCTCTCGNNGAG---AAGGTGTACAAGTCCACCAACCCTTTCG 629726 Query 47515 AGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 | || ||| | ||||| || || | ||||| |||||||| |||||||||||||| Sbjct 629725 ACTTCATGGAGAACATCTCCCTTGGCGGCAAAACCAACTTCTTCGAGAAGCGCGT 629671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499094140880