Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq119 185 9e-42 seq272 116 4e-21 seq237 102 8e-17 seq267 93.3 4e-14 >seq119 Length=1526710 Score = 185 bits (204), Expect = 9e-42 Identities = 378/553 (68%), Gaps = 13/553 (2%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || ||||||||| || | ||||| || | |||||||| ||||| || ||| Sbjct 629944 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGA 630003 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||||||||| || || |||||||| || |||| || || || |||||| Sbjct 630004 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 630063 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGG 133072 | ||||| ||||| || ||||| || || |||| | || || | ||||| | |||| Sbjct 630064 ATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGTAGAGTTCTTATCCTGG 630123 Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 ||||| || | ||||| || ||||| | | || ||| || || || || | ||||| Sbjct 630124 --ATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 630181 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATA 133190 | || | | | | | || ||| | | |||||| ||||||||| || || Sbjct 630182 TGAAGAG--GTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTA 630239 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 |||| ||||| | ||||||||| ||| || || || || ||||| || |||||| Sbjct 630240 TGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGG 630299 Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 | ||| || || ||| ||||| || ||||| || ||||||||||||||| ||| Sbjct 630300 GATCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGC 630359 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT-TGTCGTTCAAGCG---CT 133366 ||||| || || || | ||| |||||| | |||||| || | |||| || | Sbjct 630360 AGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAG-TCAATCGGTTGT 630418 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 ||||||| | |||||||| || || | |||||| | ||||| || || ||||| | Sbjct 630419 TCCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTG 630478 Query 133427 CTTTTTTGTACAT 133439 | || |||||||| Sbjct 630479 CCTTCTTGTACAT 630491 >seq272 Length=530880 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 332909 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 332850 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| || ||| | ||||| Sbjct 332849 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 332791 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | |||||||| | ||||||||| Sbjct 332790 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 332731 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || ||||| || || Sbjct 332730 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCTCCG 332695 >seq237 Length=369279 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| | | |||| | | Sbjct 287369 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCATCGGACACCATC 287428 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | || || ||||| | Sbjct 287429 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 287488 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 287489 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 287548 Query 38433 G 38433 | Sbjct 287549 G 287549 >seq267 Length=334782 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || | || ||||| || || ||| | || |||||| | |||||| | Sbjct 143254 TCGTCAAGACCTTGACCGGCAAGACTATTACCCTTGAGGTCGAGTCATCCGACACTATCG 143195 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| || || | || || ||||| | | Sbjct 143194 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGA 143135 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||| ||| ||||| ||||| || |||| || |||||| ||||||||||||||| |||| Sbjct 143134 TTTTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAGG 143075 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || |||| || ||| Sbjct 143074 AATCAACCCTTCACCTGGTCCTTCGT 143049 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || || ||| |||| || ||| | | Sbjct 143546 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCT 143487 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || || |||| ||||| ||||| || || | || || Sbjct 143486 GATACTATCGACAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCA 143428 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 143427 GCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 143368 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| ||||| |||| || || Sbjct 143367 CATCCAGAAGGAGTCGACTCTCCA 143344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171005630080