Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq221 250 3e-61 seq129 98.7 1e-15 seq276 91.5 2e-13 >seq221 Length=106736 Score = 250 bits (276), Expect = 3e-61 Identities = 463/678 (68%), Gaps = 6/678 (1%) Strand=Plus/Plus Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 ||||||||| ||||| ||||| | | |||||| || ||| | ||||||||||| Sbjct 55781 CTTATGTTTTCGTTTGAACTCGTTAACGAAGTGGTTAACGAGACGGTTGTCGAAATCTTC 55840 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| ||||| || || || | ||||| || ||||||||| | |||||| | Sbjct 55841 ACCACCCAAGTGAGTATCACCGGCAGTAGACTTGACCTCGAAGATACCTTCCTCAATGGT 55900 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | | || ||||| || ||||||||||| || || || ||||| ||||| || | Sbjct 55901 AAGGAGAGATACATCGAAAGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACC 55960 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 || ||||| || |||||||| || || || || || || || || || || || || Sbjct 55961 CTCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCG 56020 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| ||| || || || || | ||||| || || || || || || || ||||| Sbjct 56021 GAGAACGTTGAGACCGGCGATGAGACCGGCATCCTTGGTAGCCTGACGCTGAGAGTCGTT 56080 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||||| ||||| || || || |||| |||| ||| |||||| || || || || Sbjct 56081 GAAGTAGGCAGGGACGGTGACAACGGCGTTGTTGACAGTCTCACCGAGGTAAGACTCAGC 56140 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT 7827 | || ||| ||||| || | ||| | || ||||| || | | || ||| | Sbjct 56141 AGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTGAAGGTCTTCTT 56200 Query 7828 TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATA 7887 ||||| || || ||||| || || | ||| || |||| | ||| | | | Sbjct 56201 CTCACCCTTGAACTCAACCTCGATGACGGGCTT---GCCAGCCTTGTCGATGATTGTGAA 56257 Query 7888 CGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACG 7947 | | | ||||||||| | ||||||| || | ||||| | ||||| | || Sbjct 56258 GGGGAAGTGCTTCATATCGGCCTGGACCTCAGCATCGGCGAACTTGCGACCGATCAATCG 56317 Query 7948 CTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCC 8007 ||| || || || || ||||| | |||||||||||| |||||||| || || || || Sbjct 56318 CTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCACC 56377 Query 8008 GATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067 || ||||| || | || || || ||||| | || ||||| ||||| || || || Sbjct 56378 AATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTTCGGTTACCCTG 56434 Query 8068 GTCGTTCGCAATAATTTC 8085 |||||| || || || || Sbjct 56435 GTCGTTGGCGATGATATC 56452 >seq129 Length=640690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | ||| || || || ||||| || || || ||||| || Sbjct 585401 ATCGAAATCCTCACCACCAAGGTGGGTGTCACCAGCGGTAGCGAGAACCTCGAAGATGCC 585460 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | || |||||||| || ||||||||||| || || | || | Sbjct 585461 ATCGTCAATGGAGAGCAGAGAAACATCGAAGGTACCACCACCGAGATCGTA---GACAAT 585517 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | || ||| | | |||||| || |||||||| |||||||| || || || || | Sbjct 585518 GATC-TGGCGCTCGCCATCGTTCTTGTCAAGACCGTAAGCGATAGCGGCGGCGGTAGGCT 585576 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | ||| || || ||| || || ||||| | | || || || || || |||| Sbjct 585577 CGTTGACAATTCGGAGGACGTTGAGACCGGCAATGATACCGGCGTCCTTGGTGGCCTGTC 585636 Query 7695 GTTG 7698 | || Sbjct 585637 GCTG 585640 >seq276 Length=526793 Score = 91.5 bits (100), Expect = 2e-13 Identities = 226/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||| | || ||||| || ||| | |||||||| || | ||| Sbjct 288271 ATCGAAATCTTCACCACCGAGATGGGTATCACCGTTGGTGGACTTGACTTCGAAAACACC 288212 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || | | | || | ||| || ||||||||||| || || | | || Sbjct 288211 ATTCTGGATCTCAAGGATGGAGATATCGAAGGTACCACCACCAAGATCGTAGACAGCGAC 288152 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | || | || ||| ||||||||||| || | ||| || || || || || Sbjct 288151 AATGCTGTCAGCCTC------CTTCTCGAGACCGTAGGCAAGAGCGGCGGCAGTAGGCTC 288098 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCT-TG 7692 || | | ||| || ||| ||||| ||||| ||| | || || || || ||| || Sbjct 288097 GTTGACGACACGGAGGACGTTGAGGCCGGCAAT--TTGACCAGCGTCCTTGGT-GCTCTG 288041 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||| || || ||||| |||||||| ||||| || ||||| |||| | ||| |||| Sbjct 288040 TCGCTGAGAGTCGTTGAAGTAGGCAGGGACGGTGACGACGGCGTTCTTGATAGGCTTAGA 287981 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 ||| || | || ||| | || ||||| ||| | || || Sbjct 287980 GAGGTAGGCCTCGGCGGTCTCCTTCATCTTGTTGAGGAC 287942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130521461080