Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31]
287 sequences; 36,399,802 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq180 208 9e-49
seq114 158 1e-33
seq119 91.5 2e-13
>seq180
Length=606450
Score = 208 bits (230), Expect = 9e-49
Identities = 1014/1593 (64%), Gaps = 59/1593 (4%)
Strand=Plus/Minus
Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566
|||||||||||||| ||||| |||||| ||||| ||||| | | | | | | |
Sbjct 291432 GACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAA----CCTGTCG 291377
Query 109567 CT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGAT 109622
|| ||| ||||| ||||||||||||| | |||||| || | || |||| |||
Sbjct 291376 CTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGAT 291317
Query 109623 GTTTTGAATAGAGCC---ACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679
||| || ||||| || | |||| | | || | | |||||| | | ||||| ||
Sbjct 291316 GTTCTGGATAGAACCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAG 291260
Query 109680 ACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739
||| | | ||||| | | ||| |||||| || || || ||||||||
Sbjct 291259 ACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAG 291200
Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799
|| || |||||||||| | ||||| || || || || || |||||||| || ||
Sbjct 291199 GACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAAT 291140
Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859
|| | ||| || || ||||| ||||| | ||| |||||||| |||| ||| | ||
Sbjct 291139 CTGCGAAGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGT 291080
Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC 109919
||| || ||| || | | ||||| || || | || | || |||
Sbjct 291079 CTTGACATCCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAG------GGCTTGACATT 291026
Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979
|||||| || || || | |||||||| ||||| || |||||||| | ||| |
Sbjct 291025 CCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGG 290966
Query 109980 CCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036
|| || ||| || | | | || | || || || || || || || |||||
Sbjct 290965 ACCTTCCTCCTTAGCGAGTTGCACAGACGTAGTA---AGGGCAGCGTGGTAGATGGTCTC 290909
Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAA----GACCACAAA 110092
|| || || |||| |||| ||| | | || ||||| | || |||
Sbjct 290908 GAAGATTTGCTTGTTCAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAG 290849
Query 110093 GAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAG 110152
||| |||| || ||||| || ||||| ||||||||||| || || ||||||
Sbjct 290848 GAAGG----CATCAGCAAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGC 290793
Query 110153 AGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG 110212
| ||||| || || ||||| |||| |||||||| | || | ||| |
Sbjct 290792 TGTTACGAGCCTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCG-G 290734
Query 110213 TCACAGTCTTC-GTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TT 110270
|| | ||| |||| || || || || | | | ||| | | | ||| | || ||
Sbjct 290733 ACAACGACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTA-GCAAGCATCTTCATAGTT 290675
Query 110271 GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGT 110330
|| | ||| |||| | || ||||| ||||| |||| ||| || | ||
Sbjct 290674 GATGAAAGAGGGCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCA 290615
Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390
|||||| | || || || |||| |||||| || ||| ||| | |||||| || ||
Sbjct 290614 GTATTCAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTT 290555
Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450
||| ||||| |||||| ||||||||| | ||| | || || || ||||| |
Sbjct 290554 ACTCTTGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGC 290495
Query 110451 CTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGG-ACAGTTGCGTTAGCGAGACCTTCC 110508
|| |||||||| | ||| | | || | | | | | | ||||| | | ||| ||
Sbjct 290494 CTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGACTTGCG--ACCCTTACCCTCT 290437
Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTC 110568
||||||||| ||||| |||||||||| | ||||| |||| ||| ||
Sbjct 290436 CTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGG- 290378
Query 110569 GCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627
|| || || || || | ||| | ||| | || ||| || | ||||||||| ||
Sbjct 290377 GCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAG 290318
Query 110628 GTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT 110687
||||| ||||| | || |||| |||||||| || |||| || | ||| || ||
Sbjct 290317 ATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATT 290258
Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT 110747
|| || || | || || | || || | ||||||||| || || |||| ||||
Sbjct 290257 CTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAA 290198
Query 110748 GGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGAC 110801
|| || | | || ||| |||||| ||| || || || ||| ||||| ||
Sbjct 290197 GGCACC---AGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACAC 290141
Query 110802 CCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATT 110861
| ||||| |||| || || | ||| |||||| ||||| || || | |
Sbjct 290140 ACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT 290081
Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921
|||||| || |||| | || ||||||||||| ||| ||| ||| |||||
Sbjct 290080 GGCACGGATTCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACA 290021
Query 110922 C-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980
||| |||| ||| | || ||||||||||| || |||| | ||| || ||||
Sbjct 290020 AGTCT-TGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 289962
Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040
| || || | |||||| | || || || || ||||| | || || | |||||| |||
Sbjct 289961 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 289902
Query 111041 ACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071
||| |||| ||||| ||||||||| ||
Sbjct 289901 --AGAACTTGCTTGACATGAGGTTGTATGTCTC 289871
>seq114
Length=600994
Score = 158 bits (174), Expect = 1e-33
Identities = 320/464 (69%), Gaps = 22/464 (5%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|||||||| || || || || | ||||| | || || ||||| | ||||| ||| |
Sbjct 327562 CGATCGAATCGTCCAGGTCGCATCAGAGCCTTGTCCAGCATATCCGCTCGGTTAGTACCA 327621
Query 11563 GCAATGACTACAATGCCAGT-CTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620
|||| ||| || | | || | | | ||| ||| ||||||||||| || |||| |||||
Sbjct 327622 GCAAGGACGACCA--CTTGTTCACGAGTGTTGAAGCCGTCCATTTCCGTAAGAATCTGGT 327679
Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677
| | |||| |||||| || ||||| | | ||| | ||||| | ||| | |
Sbjct 327680 TCAGCGTCGCTTCACGTTCGTCGTTACCGCCAAAACC-CTTGCCGCTCTCTTGTCGCGCG 327738
Query 11678 CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
|||| || |||||||||||||| || | ||| || || ||| ||| |||
Sbjct 327739 CGACCAATGGCATCAATCTCATCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCG 327798
Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791
|||| || || ||||||||| | ||||||||| || |||||||||||||| | |
Sbjct 327799 GCGAACAGATCTCGTACACGCGAAGGTCCAACACCAACAAACATCTCAACGAATTCGGAA 327858
Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851
| || || ||||| |||||| || ||||||||| || |||| || || | |
Sbjct 327859 CCGC-TCACGCTGAA-GAAGGGTACTCCAGACTCACCCGCCGTGGCCTTGGCAAGCAACG 327916
Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---AC 11908
||||||| ||||| || | ||||| | || || || || ||||||||||||||
Sbjct 327917 TCTTACCAGTACCGGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCCAGCT 327976
Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952
|| |||| | |||||||| ||| | |||| ||||| ||||
Sbjct 327977 TTTCAAACT---TCTCAGGCTGCTTCAAGAAGCTCACAAACTCC 328017
>seq119
Length=1526710
Score = 91.5 bits (100), Expect = 2e-13
Identities = 121/167 (72%), Gaps = 1/167 (1%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || ||||| || ||||| ||||| |||||||| ||| |||| || ||
Sbjct 629946 GGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACC 630005
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| || | ||||| ||||| ||||||| | ||| || ||||||||
Sbjct 630006 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGAT 630065
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG 119661
||||| || || ||||| | ||||||| ||| |||||| |||
Sbjct 630066 ACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGC-AAAGGTAGAG 630111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588973887048600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |