Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq180 331 2e-85 seq119 176 8e-39 >seq180 Length=606450 Score = 331 bits (366), Expect = 2e-85 Identities = 1163/1773 (66%), Gaps = 116/1773 (7%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| || || || ||||||||||| ||||| Sbjct 291567 ACGGTGAACTGGATAGGGGCAGCAGCAGCCTGTGTACGGAGGTAGTACATGCCAGTCTTG 291508 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| | |||||| |||| ||| |||| | | || Sbjct 291507 AGACCGAGCTT---CCAGCCAGCGAAGTGCAT-GCTGGTGA---TCTTGCCCATGGTAG- 291456 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | || || || | ||| || |||||| ||| || ||||| | | Sbjct 291455 --GGTCCT--TCATG-------TGAATGTTGAGAGACTGAGACTGATCAATGAAGGCACC 291407 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | |||||| ||||| | | | | || ||| || | ||||||||| |||||| | | Sbjct 291406 ACGGTCAGCAGCCATCTGCACAACCTGTCGCTGAGAAATCTCCCACACAGTCTTGTACAG 291347 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848 | |||| || | |||| | |||||||||||| | ||| || || ||| ||| Sbjct 291346 AGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGAACC---GT-TAT---CAG 291294 Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900 | || | ||| ||| | ||| ||| || ||| || | || ||||| Sbjct 291293 CAATG-ATGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACAAGATCCTTGAGA 291235 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || |||||||| | |||||| || || | || || | | ||||| | ||| || Sbjct 291234 AGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAG 291175 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||| | || |||||||| || |||||||| | ||| ||||| || ||||| Sbjct 291174 GTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAAGTACTGGCGGTAGGCATA 291115 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTG---CTCGCCGATGAGGCGC-CGAAGCTC 213076 ||||| || || |||||||| | | ||||| || | | | | | || || Sbjct 291114 GGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGAC----ATCCTCTCGGAGGGG 291059 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | |||||||||| | |||| | ||| || ||||||||||| ||||| | Sbjct 291058 TTCCCAGTCCCAAAGGTCAGAGGG---------CTTGACATTCCACATGTCGAACTGGAG 291008 Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 || || |||| | ||| ||||| | | | ||||||||| || | |||||| | Sbjct 291007 AATACC----CTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTAG 290952 Query 213193 CCAGCTCGCAG-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 | || | ||| |||| |||||||||| ||||||||| || || || | | |||| Sbjct 290951 CGAGTT-GCACAGACGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTC 290893 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| |||||||| | | |||| ||||||| || Sbjct 290892 AGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCAAGA 290833 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 || || || || | || ||||||| ||| | || ||| || |||| ||| | | Sbjct 290832 CCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGC-CTCTTGGAC 290774 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| |||| ||||||||||||||| | |||||| | |||| ||||| | Sbjct 290773 AGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACGACTTGAGTGACCTC 290714 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACA-------AACTCAGGCA 213483 | ||| | || |||| |||||| | || | || | || |||| Sbjct 290713 GTGCAGCTTCT------TGAAGTCGTAGCAAGCATCTT-CATAGTTGATGAAAGAGGGCA 290661 Query 213484 GGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCT 213543 | | | | ||| ||||||||||| || ||||| | || | | ||| || ||||||| Sbjct 290660 GAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCT 290601 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCGTTG 213602 | |||||||||||| || ||||||||| || ||||||| ||||| ||| ||||| | Sbjct 290600 CAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTT--ACTCTTGCGATT 290543 Query 213603 GCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTG 213661 |||| |||||||||||||||| | ||| ||||||||| ||||| | | || || Sbjct 290542 GCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGC 290483 Query 213662 GCTCCAGAGGTACCTGGCCTTGA-CCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTAC 213719 | ||| || | | ||||||| || || ||| | | | | | ||||||| Sbjct 290482 GTACCAAAGCTTCTGAGCCTTGATAGACTTGC--GACCCTTAC---CCTCTCTCTCGTAC 290428 Query 213720 TGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG--ATG 213777 | |||||| || | | ||||||| || || | || ||| | || |||| || Sbjct 290427 TTTTCGTACAGAGCCTCAAATTCGTCACCGTAG---CAGT-CAG-CAAGGCCAGGGCATT 290373 Query 213778 CG---GGACACATGAGGCTCCAGTCCCCGTCATCTCT-GACTCTCTGCATGAACAGGTCC 213833 || || |||||||| |||| || |||| ||||| ||| | || |||||| || || Sbjct 290372 CGTTAGGGCACATGAGAGTCCATTCGCCGT-TTCTCTCGACACGCTTCATGAAAAGATCA 290314 Query 213834 GGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTG 213893 |||| ||| || || ||||||||| | | | ||| ||| || || || Sbjct 290313 GGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTT 290254 Query 213894 CGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCG 213953 || ||||| || || || |||| ||| |||||||| ||||| | ||||||||| ||||| Sbjct 290253 CGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCA 290194 Query 213954 CCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGG 214010 || || | |||| || |||||||| || | || ||||||| | ||||| Sbjct 290193 CCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGC 290134 Query 214011 ACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTC 214070 | ||| || | |||||||| || ||||| || || || || ||||| | ||| | Sbjct 290133 ATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGG 290074 Query 214071 A--GGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCC 214128 | | || | | | || || || ||||| || |||||| |||||||| || | Sbjct 290073 ATTCGGTGGGCGTTCA-AG-CCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCT 290016 Query 214129 TCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAA-GAAGCAGCTC 214187 | | || || ||| || | |||||||| || | | ||| ||| |||||| Sbjct 290015 TGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCA-TATCAACAAGGAAGCATGAT 289957 Query 214188 GAGAGCTGGGGC-CTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAA 214246 || ||||| ||| |||| | || | |||||| | |||||||| ||||| | | || Sbjct 289956 GAAAGCTGAGGCTGTGGA-GTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAA 289898 Query 214247 CTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGAC 214279 |||| | || | ||| |||| ||||||| ||| Sbjct 289897 CTTGCTTGACATGAGGTTGTATGTCTCCAAGAC 289865 >seq119 Length=1526710 Score = 176 bits (194), Expect = 8e-39 Identities = 482/732 (66%), Gaps = 24/732 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| || || || | | ||||||||||| Sbjct 629658 CTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTTTTGCCGCCAAGGGAGATGTTCTC 629717 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||| ||||||| | || |||||| || | | | || || Sbjct 629718 CATGAAGTCGAAAGGGTTGGTGGACTTGTACACCT---TCTCNNCGAGAGCAACGAGGAG 629774 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG- 48017 |||| |||||| | |||||||| | ||||||| || ||||||||| | |||| Sbjct 629775 ACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGC 629834 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| ||| | ||||| || |||||||||| ||| || ||||| || | ||| | Sbjct 629835 ACAAGGG-AGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATGT 629893 Query 48078 GCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCAT 48129 || || | |||| |||| || ||| || | ||| | | ||| | Sbjct 629894 CCT------GGATCATCTG----TTTGCTG-GCACGTCCCTTGAGGTGAGAGTGGAGGAG 629942 Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||||||||||| |||| | || || || || |||||| |||| || |||| || Sbjct 629943 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 630002 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||||||||||| || | || ||||||||||| || | || || | || |||||| Sbjct 630003 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 630062 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||| ||||| || || || || || || | || | || | || |||||| || Sbjct 630063 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGTAGAGTTCTTATCCTG 630122 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 |||||| | ||||| || |||||||| |||||| || || || || | ||| Sbjct 630123 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 630182 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 |||||| | | | || | | |||| | |||||| || || | ||| | Sbjct 630183 GAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGT 630242 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 || ||||| | ||||| || ||||||||| || |||||| | ||||| | Sbjct 630243 TTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGAT 630302 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| || || | ||||| ||| | |||||||||||||| || || || || ||||| Sbjct 630303 CTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAGC 630362 Query 48550 AAAGAAGGCAAG 48561 ||||| ||||| Sbjct 630363 GAAGAAAGCAAG 630374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529458126080