Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq119 176 1e-38 seq180 129 2e-24 seq159 118 3e-21 seq219 116 1e-20 >seq119 Length=1526710 Score = 176 bits (194), Expect = 1e-38 Identities = 264/370 (71%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| ||||| | ||||| |||||| || ||||| || |||| Sbjct 630298 CCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATGGAGAACATCCACTCCGAAACAT 630239 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423 | || || || ||||| |||||||| || | | |||| | ||| || | |||||| Sbjct 630238 ACTCCCTCCTCATCGATACCTACATCAAGGACCCTGCCCAGC-GTACATACCTCTTCAAC 630180 Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||| || | ||||||| || |||||| | || ||||| || |||||||||| Sbjct 630179 GCCGTTGACACTATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAG 630120 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 || ||| | | |||||| ||||| ||||||||||||| || ||||| || || Sbjct 630119 GATAAGAACTCTACCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTC 630060 Query 133544 ttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || |||| | || || ||||| || |||||||| | | ||||| || Sbjct 630059 TTCAGCGGTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCT 630001 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTT 133662 | | ||||||||||| || ||||| | || |||| ||||||||||| |||||| | | Sbjct 630000 GAGCTTTTCTAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTCT 629941 Query 133663 ACTTCACTCT 133672 || |||||| Sbjct 629940 CCTCCACTCT 629931 >seq180 Length=606450 Score = 129 bits (142), Expect = 2e-24 Identities = 545/853 (64%), Gaps = 11/853 (1%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| |||||| | |||||| ||||||||| || || |||||| || | ||||| | Sbjct 290618 CGCAGTATTCAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTT 290559 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 ||||| || | || || ||||||||| || ||| | ||| |||| ||||| ||| Sbjct 290558 GGTTACTCTTGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCT 290499 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || ||||| ||| || | | || || || |||| | || | Sbjct 290498 GGGCCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTGATAGACTTGCGACCCTTACCCT 290439 Query 155806 CCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCC 155863 | ||| || |||| || | ||| | | || |||||||| || ||| || || Sbjct 290438 CTCTCTCGTACTTTTCGTACAGAGCCTCAAAT--TCGTCACCGTAGCAGTCAGCAAGGCC 290381 Query 155864 AGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAA 155923 |||||| | | ||||| | || | ||| || | ||||||| ||| || Sbjct 290380 AGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAA 290321 Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTG 155983 | |||| ||||| ||| |||| ||||| | || |||||| | ||||| Sbjct 290320 AAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTG 290261 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 |||||| || || || | ||| || | || | || |||||| || || || || Sbjct 290260 ATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGC 290201 Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 || |||| | |||| |||||||| || || || |||||||| || ||||| || Sbjct 290200 GAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACAC 290141 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 || ||||| |||| ||||| |||||||| |||||||| ||| || | || |||| Sbjct 290140 ACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT 290081 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGC 156219 | || | || | | ||||||||||| | |||| || ||||| || | Sbjct 290080 GGCACGGATTCGGTGGGCGTTCAAGCCAATACCACCAG-CCATCTTGGAAATCATGGCAC 290022 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 | ||| | |||| | | ||||| ||||| || || | ||| | || ||| Sbjct 290021 AAGTCTTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 289962 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | ||||| |||| || || |||||||||| || || |||||||| | | Sbjct 289961 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 289902 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCCGTGA 156398 | |||| | ||||| | |||||||||| | ||||| || |||| || Sbjct 289901 AGAACTTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGA 289842 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 | || | || ||| | ||| ||||||||| || ||||| |||| || ||||| Sbjct 289841 TTCCA-ACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATC 289783 Query 156459 CGCAGAAGGTATG 156471 | || | ||||| Sbjct 289782 TGTAGCAAGTATG 289770 >seq159 Length=450870 Score = 118 bits (130), Expect = 3e-21 Identities = 382/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| |||| || Sbjct 136711 ATGAGTCCACAAATTTCGCAAACGTGGACTCGGAAAGCATCCGACACCTCAAATAGACGC 136652 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| || |||||||| | |||||| |||||||| ||||| || ||||| Sbjct 136651 TCCTTCAGGAAGGCAGCAGCACCGTGAGCAATCATGCAATCACGTTCCATCTCTCCGAAT 136592 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| || || | ||||||| ||||||| || || | | | | ||| Sbjct 136591 CGCAGACCACCATCTCGGGCACGACCCTCGACAGGCTGCCGGGTCATAATCTGAACGGGA 136532 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || || || || ||| |||| ||||| || ||||| |||||| ||| Sbjct 136531 CCACGGGCACGAGCGTGGATCTTGTCATCCACCATGTGACGAAGACGTTGGTAGTATGTA 136472 Query 251647 GGACCGATGAAGATGCTCGA--AGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704 || |||| ||||| || || | | | | ||| || || | || ||||| || | Sbjct 136471 GGTCCGAAGAAGA--CTTGAGCACGGAGCTTACGTCCGGTGTGACCATTGTACATGACCT 136414 Query 251705 CGTTTCCATTAGATTCATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATCT 251761 | || ||||| ||||| ||| || | | ||||| | | | | Sbjct 136413 CAAAACCTCGAGATTGGTAACCGTGTTTTCTCAGAATATCTGACACGGAGT---CGACGG 136357 Query 251762 TGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTA 251821 ||| | | || || |||| || | | |||| | | | || || | | Sbjct 136356 TGACATCAGTGAATGGCGTTGCGTCACCCTCCATACCCTCCAGTGTTGAGACCTTACTCA 136297 Query 251822 AAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGA 251881 |||| ||| ||| ||||| || ||||||||| |||||||| || || ||||||| Sbjct 136296 AAAGACACTCAATCAAATGGGCAATTGTCATACGAGACGGAATAGCGTGAGGGTTGATGA 136237 Query 251882 TGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTT 251940 | ||||| || |||| || || |||| |||||||||| | || ||| | Sbjct 136236 TAATGTCAGGAGTCAGACCCTCTCTGCTGAAAGGCATATCCTCCT-GTCGATAGGTAACA 136178 Query 251941 CCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || || |||||||| ||||||||||| |||||| |||||||| Sbjct 136177 CCGATTGTACCCTTTTGACCGTGACGAGAGGCGAACTTGTCACCAAT 136131 >seq219 Length=456220 Score = 116 bits (128), Expect = 1e-20 Identities = 204/297 (69%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 302568 AATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTAC 302627 || |||||| | | ||||| || || |||||||| ||||||||| || || || || Sbjct 223590 AAGGTCTTCAAGAGCCTTGACCAATCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGAC 223531 Query 302628 AGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCG 302687 || |||||||| ||||| | |||||| |||| || |||||||| | ||| || Sbjct 223530 CGCAGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGT 223471 Query 302688 TAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTT 302747 || || | | | ||| |||| ||||||||||| || ||||| |||| || ||| Sbjct 223470 AAGACCACGTAGGTAAGAGTTCTCGACGAAACCACGGGCTTCGGGAGAATAATCATCCTT 223411 Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807 ||| || || ||||| || | | || | || | || || |||||||| || ||| | Sbjct 223410 GGTGAAATGAGGCAGAGTACGATACTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGAT 223351 Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || || || | || | |||| |||||||| || | | | |||||||| || Sbjct 223350 TTGTTGACCGACAAGCGCAGTCATTTGCGAAATGTTGATAGAAGAACCCTTGGAACC 223294 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| | ||| || ||||| |||| ||||| |||||| | |||||||| Sbjct 224363 AGAATTTCTTTGAGACGAGGCACACCCAGGGTGACGTT---CTTGGAAGACACACCAGCG 224307 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||| | ||||||||||| || || || | Sbjct 224306 AAATGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAA 224247 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 224246 ACACCAACCATTTCACCAGG 224227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812187850719