Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31]
287 sequences; 36,399,802 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq195 120 4e-21
seq180 113 6e-19
seq238 104 3e-16
seq119 91.5 2e-12
>seq195
Length=674302
Score = 120 bits (132), Expect = 4e-21
Identities = 87/101 (86%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251
||||||||||| |||||||| || ||||| |||| |||||| | || ||||||||||||
Sbjct 33779 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 33838
Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||| | |||||||| |||||||||||||| || ||
Sbjct 33839 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 33879
>seq180
Length=606450
Score = 113 bits (124), Expect = 6e-19
Identities = 205/300 (68%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || |||| ||| || || || |||||||| |||| ||||||||
Sbjct 290173 CTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTTGGA 290114
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| ||||| || || | ||| | ||| | ||| || | ||| ||| |||||
Sbjct 290113 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCAAGCC 290054
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| |||||| || | || || ||||| || |||||||| || ||
Sbjct 290053 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 289994
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| ||||||| || || || ||||| || || || || || | || ||
Sbjct 289993 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGAGTACC 289934
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| | ||||| | || ||||| |||| | |||||| || ||| ||
Sbjct 289933 GGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 289874
>seq238
Length=584110
Score = 104 bits (114), Expect = 3e-16
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| ||||| || || || ||||| ||||| | ||| | || |||||||||
Sbjct 109093 GACAGCACTGGCGGAACCGTCACCTGCGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 109152
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| |
Sbjct 109153 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 109212
Query 19167 AAGGGATTCGAG 19178
|||| ||||||
Sbjct 109213 AAGGCCTTCGAG 109224
>seq119
Length=1526710
Score = 91.5 bits (100), Expect = 2e-12
Identities = 171/250 (68%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | |||||| |||||| |||||||| ||||| | || |||||
Sbjct 629653 GCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTTTTGCCGCCAAGGGAGATG 629712
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| || |||| | ||
Sbjct 629713 TTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCNN---CGAGAGCAACG 629769
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || ||||| || ||||||||||| ||||||| || |||||||||||
Sbjct 629770 AGGAGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGC 629829
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| | | |||||| | ||| || ||||| ||| |||
Sbjct 629830 AGGGCACAAGGGAGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATA 629889
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 629890 ATGT-CCTGG 629898
Score = 91.5 bits (100), Expect = 2e-12
Identities = 176/251 (70%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGA 869273
|| || ||||||||||| |||||||||||||| |||||| | || || || ||| ||
Sbjct 630001 AGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG--GAAGCAAAGGCACCGCTGA 630058
Query 869274 AAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT 869333
| ||||| ||||| ||||| ||||| | | || |||| |||||| || || | ||
Sbjct 630059 AGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAG--GTAGA-GTTCT 630115
Query 869334 CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGA 869393
| | |||||| || ||||| || ||||| || | | | || | ||||| |
Sbjct 630116 TATCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAA 630175
Query 869394 TGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGC 869452
|||| ||||||| || | | ||| |||||||||| ||||| ||||| |||||
Sbjct 630176 CGGCGTTGAAGAGGTATGTAC-GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGG 630234
Query 869453 GAATAGGTCTC 869463
|| || || ||
Sbjct 630235 GAGTATGTTTC 630245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107115647435979
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |