Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31]
287 sequences; 36,399,802 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq180 143 2e-29
seq267 104 2e-17
>seq180
Length=606450
Score = 143 bits (158), Expect = 2e-29
Identities = 417/632 (66%), Gaps = 19/632 (3%)
Strand=Plus/Minus
Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361
||||||||||||||| || | || ||| ||||||||| ||||| ||| | | ||
Sbjct 290434 CTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 290375
Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421
| || ||| |||||||| | |||| ||||||| || ||| ||| ||||||| |||||
Sbjct 290374 TTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATC 290315
Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481
|| ||||| | ||| || | || || || || || ||| | || || | |
Sbjct 290314 AGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTA-CCGTGATTC- 290257
Query 139482 TTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539
|||| | | |||||| || || ||||| ||||||||||| || || |||||||| |
Sbjct 290256 TTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAG 290197
Query 139540 GCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596
|| || || ||| ||||| || || |||| || ||| || ||||| || |||
Sbjct 290196 GCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGC 290137
Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCG 139652
| ||| || | | |||| | | || || ||||| || | | | | | | ||
Sbjct 290136 AGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT---- 290081
Query 139653 AGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA 139712
|| |||| || | || | ||| || || || | | ||||| || | | ||
Sbjct 290080 GGCACGGATTCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACA 290021
Query 139713 A-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771
| || | | || ||||| ||||| |||||||| |||| ||| || || ||||
Sbjct 290020 AGTCTTG-AGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 289962
Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831
|||| ||||| || || || || ||||| || | ||| || || || || ||||
Sbjct 289961 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 289902
Query 139832 A-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890
| | ||| || ||||| | | ||| || || | | | | | ||||||| || |
Sbjct 289901 AGAACTTGCTT-GACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG 289843
Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTG 139922
|| || |||| ||||||||| | |||||| ||
Sbjct 289842 ATTCCAACAGCGACTCGCATGATCATATGCTG 289811
>seq267
Length=334782
Score = 104 bits (114), Expect = 2e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || | ||||| || |||||||| ||||| || || |
Sbjct 143549 ACCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCA 143490
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| || || | || | || || |||||||| ||||| || || || ||||| |||
Sbjct 143489 TCTGATACTATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGAT 143430
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || || ||||| || ||||| || ||||| |||||| | | | | || || ||
Sbjct 143429 CAGCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 143370
Query 24881 AACATTCAAAAGGAATCGACACTACAC 24907
||||| || ||||| ||||| || |||
Sbjct 143369 AACATCCAGAAGGAGTCGACTCTCCAC 143343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449895985992360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |