Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31]
287 sequences; 36,399,802 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq272 134 1e-26
seq267 114 1e-20
seq237 107 2e-18
>seq272
Length=530880
Score = 134 bits (148), Expect = 1e-26
Identities = 156/208 (75%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||| ||||| || ||||| |||| || ||| | | | ||||||||
Sbjct 332704 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAG 332762
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||| || || | || || ||||||||||| || ||||| || |||||||| |||
Sbjct 332763 CTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGAT 332822
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | |||| ||||||| | |||||| || | ||||| || || ||
Sbjct 332823 CTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCC 332882
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661
|| || || || |||||||||||||||
Sbjct 332883 CGTGAGGGTCTTGACGAAAATCTGCATG 332910
>seq267
Length=334782
Score = 114 bits (126), Expect = 1e-20
Identities = 147/200 (74%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| | ||| | | | |||||||||||||||||
Sbjct 143350 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCGAGCTGCTTGCC 143408
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| | |||||||| || ||||||||||| |||||||| |||||| |||
Sbjct 143409 GGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 143468
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | || || | | ||| || |||| ||| | || |||||||||| ||
Sbjct 143469 CACGTTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGT 143528
Query 133643 TTTTACGAAAATCTGCATGG 133662
|| ||||| ||||||||||
Sbjct 143529 CTTGACGAAGATCTGCATGG 143548
Score = 100 bits (110), Expect = 3e-16
Identities = 137/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| || || ||||| || ||||| ||| | || ||| |||||||||||||||||
Sbjct 143067 GGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGACC-GTCCTCGAGCTGCTTGC 143125
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| | |||||||| || |||||||| || |||||||| |||||| ||
Sbjct 143126 CGGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 143185
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | ||||||| | ||| || || | ||| | || |||||||||| |
Sbjct 143186 TGACATTGTCGATAGTGTCGGATGACTCGACCTCAAGGGTAATAGTCTTGCCGGTCAAGG 143245
Query 133642 TTTTTACGA 133650
| || ||||
Sbjct 143246 TCTTGACGA 143254
>seq237
Length=369279
Score = 107 bits (118), Expect = 2e-18
Identities = 119/158 (75%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| ||| | || | |||||||| || || |||||||| ||||||
Sbjct 287514 TCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTG 287455
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | ||||| | | ||| || |||| ||||| |
Sbjct 287454 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGATGACTCGACCTCGAGGGTGATG 287395
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGC 133663
|| ||||| ||||| || || |||||| ||| |||||
Sbjct 287394 GTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 287359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483419065727880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |