Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq119 147 3e-30 seq180 118 1e-21 >seq119 Length=1526710 Score = 147 bits (162), Expect = 3e-30 Identities = 372/559 (67%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| || || |||||||| | | ||| | ||||||||||| | || Sbjct 629944 CAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGA 630003 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 |||||||| || |||||||| |||||||| || |||| |||||| | || |||||| Sbjct 630004 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 630063 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATGT 39793 || || || || || ||||| |||||||| | || | | | | | | || || Sbjct 630064 ATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGTAGAGTTCTTATCCTGG 630123 Query 39794 ATCCA-CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| | || |||||||| || ||||| | ||||| || || || | || || Sbjct 630124 ATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 630182 Query 39853 AAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 ||||| | |||| | || || || | || ||||| || | || || Sbjct 630183 GAAGAGGT-ATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 630241 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||| || |||||||| || ||| ||||| || || || || |||| || || | | Sbjct 630242 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 630301 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 | || ||||| | |||| || | | ||| ||||| || || || || || | Sbjct 630302 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 630361 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCC 40088 | || || || | | || || || |||| || || | |||||| || |||| Sbjct 630362 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 630421 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | || ||| || || | ||| | || ||||||||||| || || |||||||||| Sbjct 630422 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 630481 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | ||| || Sbjct 630482 TCTTGTACATTTGCCAGAT 630500 >seq180 Length=606450 Score = 118 bits (130), Expect = 1e-21 Identities = 588/925 (64%), Gaps = 16/925 (2%) Strand=Plus/Minus Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-TATTGTATTATCTCTGTACA 69335 || || || || ||||| || ||||||| || ||| |||| || ||||| || || Sbjct 290652 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 290594 Query 69336 TAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395 || || | | ||| || || || || | || |||||||| || ||| || Sbjct 290593 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 290534 Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC 69455 |||||| || || || || | || || || |||| | || | ||| | | ||||| Sbjct 290533 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 290474 Query 69456 GACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCTTTTTCATATTGT--GTATAT 69510 | ||| || || | |||| || ||| |||| | || || | | ||| | Sbjct 290473 CTTCTGAGCCTTGATA---GACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 290417 Query 69511 AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATC 69570 |||| || ||||| || || | ||| | | ||||| ||||| || || ||||| Sbjct 290416 AGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATG 290359 Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630 | | ||| | | | || || || ||||| || ||||| || |||||||||||| Sbjct 290358 AGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCT 290299 Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690 | || || || | | | || || || || ||| ||| ||||| || ||| Sbjct 290298 AAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAAC 290239 Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750 || | | || | |||||||| || || || || || | | | || ||||| || || Sbjct 290238 TCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTA 290179 Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || ||||| || | ||| | |||||||| || | || | |||||| |||| ||||| Sbjct 290178 CCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCG 290119 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || ||||||| || || | || ||| || | || || || | | | | Sbjct 290118 TTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGTT 290060 Query 69871 -AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || || || || ||||| || || || | |||||| || | || || || || Sbjct 290059 CAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGAT 290000 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTAT 69989 ||| || ||||| || || |||| | || ||| || || || | ||| | ||| Sbjct 289999 ACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGG 289940 Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || || || ||||| || || ||| |||||||| | || || | || || Sbjct 289939 AGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTT 289880 Query 70050 GTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCA 70108 |||||| || | | || ||||| ||| | ||||| | ||||| ||||| | Sbjct 289879 GTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATGA 289821 Query 70109 ACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 ||||||||| || || || | |||| | || | | || ||||||| | || Sbjct 289820 TCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACA 289761 Query 70169 GAGTTTTAAACCCAAAATAGTTGTA 70193 ||| || |||||||||||||| Sbjct 289760 AGGTTCGGAAGCCAAAATAGTTGTA 289736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906335714680