Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq180 176 5e-39 seq119 129 7e-25 seq114 93.3 5e-14 >seq180 Length=606450 Score = 176 bits (194), Expect = 5e-39 Identities = 569/870 (65%), Gaps = 25/870 (3%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||| || || | || || || || || ||||| ||| Sbjct 289807 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 289866 Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| || ||||| |||| | | ||| ||| |||| || || | Sbjct 289867 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCAAGCCCCACTTTA 289924 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || ||||| ||| || || | || ||||||||| | | | |||||| Sbjct 289925 TTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAG 289984 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | |||||||| | || || | | ||||| || || ||| |||| Sbjct 289985 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 290044 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || |||||||| || || ||| | | |||| | ||| || || || Sbjct 290045 GGTGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 290104 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 |||||| || | ||||| |||| ||||| || || || ||| ||| || || || Sbjct 290105 AATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 290164 Query 104579 GTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 104632 || | || | ||| | ||| || || |||| |||| |||||||||||| Sbjct 290165 GTTGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGG 290221 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | ||||||||||| | || || || ||| | ||||||| ||| Sbjct 290222 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGC 290281 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || || || |||| ||||| ||||| || ||||| ||||||||| | || ||| Sbjct 290282 GCT--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGA 290339 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTG 104809 | ||| | ||| ||||| | || || || || || ||||| || | || | Sbjct 290340 GAAACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTAC 290398 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 ||||| || ||||| || || ||| |||||||||| ||| ||| || | | || | Sbjct 290399 GGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGT 290456 Query 104870 GTGCCA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || ||| | || | | ||| | || ||||| || | || || ||||| || | Sbjct 290457 CTATCAAGGCT-CAGAAGCTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAAC 290515 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| || ||| || | |||||||| |||||||| | ||| Sbjct 290516 CCTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACC 290575 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| || ||||| || || || || ||| | |||| | | |||||| ||| Sbjct 290576 ATCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCT 290635 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCC 105076 || || ||||| || || | |||| ||| Sbjct 290636 GTTTGCAACCTTGCCTCCTTGTCTCTGCCC 290665 >seq119 Length=1526710 Score = 129 bits (142), Expect = 7e-25 Identities = 351/525 (67%), Gaps = 17/525 (3%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 94497 ||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | | Sbjct 630464 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 630405 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | | || | | ||||| |||| || || ||||| |||| ||||| || || Sbjct 630404 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 630345 Query 94558 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615 || ||||||| | | | | | | || | ||||| || |||| | || || ||| Sbjct 630344 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 630287 Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674 |||||||| | ||| |||| ||| | | | || || |||||| ||| Sbjct 630286 GCTTCTATGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 630228 Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 || || | || || ||||| ||| || | | ||||| | ||| | | || Sbjct 630227 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 630168 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 94791 |||| || || | |||||| ||||||||||| || ||| | |||| || || Sbjct 630167 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 630109 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 | |||||||| |||| || | || ||||| |||||||||||||||||| ||| Sbjct 630108 --TACCTTTGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 630051 Query 94852 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 |||| ||| | || | |||||||||||||| || |||||||| ||||| |||| || Sbjct 630050 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 629992 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || |||||||| ||||| || ||| || ||||| Sbjct 629991 TAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGC 629947 >seq114 Length=600994 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/262 (69%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||||||||||||||| || |||| |||||| || || | || | | | || || Sbjct 327747 GGCATCAATCTCATCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 327806 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 ||| ||||||||| | || ||||||||||||||||| || || | | || || Sbjct 327807 ATCTCGTACACGCGAAGGTCCAACACCAACAAACATCTCAACGAATTCGGAACCGCTCAC 327866 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 || | |||||| || ||| |||||||| |||| ||| || | |||||||| | Sbjct 327867 GCTGAA-GAAGGGTACTCCAGACTCACCCGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 327925 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 9938 |||| || || || | | ||||||||||| |||||||| || || |||| | Sbjct 327926 TACCGGGGGGTCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCCAGCTTTTCAAACT 327985 Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959 ||||||| ||||| ||||| Sbjct 327986 ---TCTCAGGCTGCTTCAAGAA 328004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258707551880