Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq180 226 3e-54 seq135 152 6e-32 >seq180 Length=606450 Score = 226 bits (250), Expect = 3e-54 Identities = 419/608 (69%), Gaps = 10/608 (2%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| || | ||||||| ||||| | || ||| |||||||| ||||||| Sbjct 289808 CCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGTC 289867 Query 53240 CGTGAGACGTACGACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGT 53297 ||||| ||| || | ||| ||| |||| ||| || || || | || || | | Sbjct 289868 TTGGAGACATACAACCTCATGT--CAAGCAAGTTCTTCACTCATGCAAGCCCCACTTTAT 289925 Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357 ||||||| ||||| || |||||| | || |||||||| || | |||||||| | Sbjct 289926 TCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAGG 289985 Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 || || || || |||||||| || |||||| |||||| || |||||| | | | Sbjct 289986 ACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTG 290045 Query 53418 GTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 ||||||| || | || | |||| ||||||| | ||| | ||| || || Sbjct 290046 GTGGTATTGGCTTGAACGCCCACCGAA--TCCGTGCCACTGGCTCTTACATCGCCGGTAC 290103 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 || || || | || ||||| || ||||| || || ||||||||||| || || || Sbjct 290104 CAATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 290163 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| ||||||||||| ||||| || | |||||||||||||| ||||| ||||| Sbjct 290164 CGTTGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCATGGCA 290223 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 ||||||| | | ||||| || || || || |||||| ||| | || ||| | ||| Sbjct 290224 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 290283 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 ||||||||||| |||||| ||||| || || || |||||| | || |||| | Sbjct 290284 TCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGAAA 290343 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTG 53774 || || ||| || |||||||| ||||| ||||| |||| | | | || |||||||| Sbjct 290344 CGGCGAATGGACTCTCATGTGCCCTAACGAATGCCCTGGCCTTGCTGACTG-CTACGGTG 290402 Query 53775 AGGAGTTT 53782 | || ||| Sbjct 290403 ACGAATTT 290410 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAGTCTGATTGACATGAGT 55786 |||||| | ||| ||| |||||||||||| | ||| | || || | | ||| | Sbjct 291339 TCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG-TGCAGATGGCT 291397 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 ||||| |||||||| | ||| || ||||| |||||||| ||||| |||| || | ||| Sbjct 291398 GCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGGACCCT 291457 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | ||| |||| | | | |||||||| || |||||| || |||||||| || Sbjct 291458 ACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 291517 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 291518 ATGTACTACCTCCGTAC 291534 >seq135 Length=515129 Score = 152 bits (168), Expect = 6e-32 Identities = 192/264 (73%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357 ||| || |||||| ||||||||| || |||||||| ||||| ||||| || | ||| Sbjct 184946 TAGTCGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACC 184887 Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||| | |||||| || |||| | ||| | |||||| | |||||| ||||| ||||| | Sbjct 184886 GAAGTTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAG 184827 Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477 | | ||| || |||||| | ||||| ||||| || |||||||| || | ||| Sbjct 184826 GCCAATAATGGTCTGTTGGAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACAC 184767 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537 || || |||| | | | |||||| ||||| ||| ||| |||||| ||| || || Sbjct 184766 ATAACCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTA 184707 Query 117538 AATCACCTTGCGCTGACTTGGCTT 117561 || ||||||||||||| ||||| Sbjct 184706 GATGACCTTGCGCTGACCGGGCTT 184683 Score = 120 bits (132), Expect = 3e-22 Identities = 206/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||||| |||| || | ||||| ||||| |||||||| || || | || || Sbjct 184942 CGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 184883 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||| || ||| ||||| |||||| | ||||||||| |||||||| | Sbjct 184882 TTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAGGCCA 184823 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | ||| || || || | |||||||||||| || |||||||| || | | || Sbjct 184822 ATAATGGTCTGTTGGAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACACATAA 184763 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||| | | |||||| |||| | ||| ||| |||||| || ||||| || Sbjct 184762 CCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTAGATG 184703 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||||||||| || || || ||||||| || ||||| || ||| || |||| Sbjct 184702 ACCTTGCGCTGACCGGGCTTGAATCCGTCCAGAACAGATGGAATAGATCGCATGTTGTC 184644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214036862600