Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq180 246 3e-60 seq267 185 1e-41 seq272 170 2e-37 seq135 132 5e-26 seq237 114 1e-20 seq119 100 3e-16 >seq180 Length=606450 Score = 246 bits (272), Expect = 3e-60 Identities = 1131/1762 (64%), Gaps = 68/1762 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || ||||||||| | |||| Sbjct 291540 GCCTGTGTACGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGC 291481 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | || |||| || |||| ||||| ||||||||||||||| Sbjct 291480 ATGCTGGTGATCTTGCCCATGGTAGGGTCCTTCATGTGAATGTTGAGAGACTGAGACTGA 291421 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT-TTCAATAATTGACTTTTGTGGAATTTCCCA 80210 ||||| || ||||| || || ||||| | || | || | || | ||| ||||| Sbjct 291420 TCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAACCTGTC-GCTGAGAAATCTCCCA 291362 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| | ||| | || |||| | | | | | Sbjct 291361 CACAGTCTTGTACAGAGCCTT---GATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGA 291305 Query 80268 ACCGTCCTTTACA---ATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||||| | || || | || |||| || | ||| | ||| | | | || Sbjct 291304 ACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACAAG 291245 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 ||| || | ||| | | ||| || | || ||||| || || ||| || || | Sbjct 291244 ATCCTTGAGAAGCCAGGGGTTGACAA-CCTG--GAACTCGCCAGCAAGGACTCGGCGTTG 291188 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | |||||||||||||| |||||||| || || ||||| | || || Sbjct 291187 GTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAAGTACT 291128 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || | || | ||| || || | ||||| |||||| |||||| Sbjct 291127 GGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTC 291068 Query 80502 GCGCA---AATCTGA---CCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGC 80553 || | || | ||||| ||| | ||| |||| |||||||||| | Sbjct 291067 TCGGAGGGGTTCCCAGTCCCAAAGGTCA----GAGGGCT-TGACATTCCACATGTCGAAC 291013 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | || ||||| || || || || ||| ||| || ||| || || ||| ||| Sbjct 291012 TGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTA 290953 Query 80614 GCCAGCT-CACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 || || | |||| ||| ||||||| ||||| || ||| ||| |||| |||||| Sbjct 290952 GCGAGTTGCACA-GACGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTT 290894 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 || | || |||| || || || | || || | | ||| | ||||| || Sbjct 290893 CAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCAAG 290834 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAA 80791 || || || || | | || || ||||| ||| |||| | | || ||||| | | Sbjct 290833 ACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTT-GCTGTTACGAGCCTCTTGGA 290775 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| ||| ||||||| ||||| ||||| ||| || | || || | Sbjct 290774 CAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACGACTTGAGTGACCT 290715 Query 80852 CATGAAGTTTCTGAAAGTCGAA--TTGGTTCCCC----TTCACAAATGCCGGAAGGCTCA 80905 | || || |||| |||||| | | || | || | || | || || || Sbjct 290714 CGTGCAGCTTCTTGAAGTCGTAGCAAGCATCTTCATAGTTGATGAAAGAGGGCAGAGACA 290655 Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGC 80965 ||| || || ||||| || || ||||| |||| | | || | ||| || |||| Sbjct 290654 AGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGC 290595 Query 80966 ACAAATTAGAAGACTT--AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGC 81023 ||| || || ||| || ||||| ||||| || ||||| |||| ||||| Sbjct 290594 ACAGGTTGGA--GCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTG 290537 Query 81024 GTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083 ||||||||| |||| | ||| | |||||||| ||| | || || ||||||| ||| Sbjct 290536 ATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCA 290477 Query 81084 AATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGC 81143 || || | ||||||| |||||| || || || | | ||||| |||| Sbjct 290476 AAGCTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 290417 Query 81144 TTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 | || || | | |||||| | || |||| ||| | ||||| |||||||||||||| | Sbjct 290416 AGCCTCAAATTCGTCACCGTAGCAG-TCAGCAAGGCCAGGGCATTCGTTAGGGCACATGA 290358 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 | ||| ||| || |||| ||| |||||||||| ||||||||||| || || Sbjct 290357 GAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTA 290298 Query 81263 TGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAA 81320 ||||||||| || |||||| ||||||| | ||| || || || | || || || Sbjct 290297 AGAACAGGTCACG--AGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 290240 Query 81321 GTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCG 81374 || | || ||| || ||||||||||| || || | ||||| | || | |||| Sbjct 290239 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 290180 Query 81375 ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434 | |||||||||| |||||||| ||||| ||| || ||||||| ||| || | ||| Sbjct 290179 A---CCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGAT 290123 Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTG 81492 ||| | || ||| || ||||| |||| || || |||| || | | || Sbjct 290122 ACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGC 290063 Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 || || || || ||||| | | ||| |||||| ||||| || | ||| || Sbjct 290062 GTTCAA--GCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 290005 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 || || || || ||||| || | ||||| |||| | ||| || ||| | |||||| Sbjct 290004 TAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGG- 289946 Query 81613 CTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670 | | ||| ||||| ||||| | || ||| | || ||| |||| | | |||||| Sbjct 289945 -CTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACA 289887 Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 | |||| || || ||| ||| || |||||||||||| || || | ||| || | Sbjct 289886 TGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGATTCCAACAGCGACTC 289827 Query 81731 GCATAAACATGTACTG-GGGCG 81751 |||| | ||| | ||| ||||| Sbjct 289826 GCATGATCATATGCTGCGGGCG 289805 >seq267 Length=334782 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||||||||| || |||||||||||| | Sbjct 143546 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCT 143487 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || ||||| | || || |||||||||||||| || ||||| || ||| Sbjct 143486 GATACTATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 143427 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||| || || ||||| |||||||||| || ||||| | ||||| || Sbjct 143426 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 143367 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| | || ||||| ||||| Sbjct 143366 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGCCTTCGTGGTGG 143320 Score = 178 bits (196), Expect = 1e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| | ||||||||||||||||| |||||||| |||||| || | || | Sbjct 143252 GTCAAGACCTTGACCGGCAAGACTATTACCCTTGAGGTCGAGTCATCCGACACTATCGAC 143193 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| || ||||| || |||||||| | ||| Sbjct 143192 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATT 143133 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||| | ||| ||||| | ||||| || |||| |||||| Sbjct 143132 TTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAGGAA 143073 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || || ||||| || ||| | |||||||| |||||||| Sbjct 143072 TCAACCCTTCACCTGGTCCTTCGTCTTCGTGGTGGACA 143035 >seq272 Length=530880 Score = 170 bits (188), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 332912 ATCATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 332853 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| || | ||| | || || |||||||||||||| || || || ||| Sbjct 332852 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGAC 332793 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTA 27581 |||||||| || || |||||||||||||| |||||||||| || ||||| ||| ||||| Sbjct 332792 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTA 332734 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| ||||| | ||| | || ||||| ||||| Sbjct 332733 CAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGCCTTCGTGGTGG 332683 >seq135 Length=515129 Score = 132 bits (146), Expect = 5e-26 Identities = 299/446 (67%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| || |||||| || |||||| ||||||| ||||||||||| || || Sbjct 184649 CATGCGATCTATTCCATCTGTTCTGGACGGATTCAAGCCCGGTCAGCGCAAGGTCATCTA 184708 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 ||| ||| |||||| ||| || | |||| |||||| | | || | || || || Sbjct 184709 CGCGTGCTTCAAGAGAAACTTGATCAAAGACAAGAAGGTCGTTGAATTGGCAGGTTATGT 184768 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 | | || || ||||| || |||||||| || ||| ||||| |||||| | ||| Sbjct 184769 GTCCGAACAGACGGCATACCACCACGGTGAACAGTCACTCCAACAGACCATTATTGGCCT 184828 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 |||||||||||| || || | || ||| | |||| || || || |||| | || || Sbjct 184829 TGCTCAGAACTTCGTGGGCTCGAACAACATCAACTGCCTGGAACCCAGTGGAAACTTCGG 184888 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCG--TCTC 32256 | || || || ||||| |||||||| || | ||||||| |||||||| | || Sbjct 184889 TTCTCGACTTGCAGGTGGTTCTGATGCTGCCAGTCCTCGTTACACTTTCACCCGACTATC 184948 Query 32257 GCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTT 32316 || |||||| | ||||| || || |||| ||| || | || | || ||| | Sbjct 184949 GC-CCTTCG-CCCGCAAAATCTTTCACCCTATGGATGAGCCCAACCTGTTGCACCATTAT 185006 Query 32317 GATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTG 32376 || || || || ||||||| || | || || | ||||| ||| | |||| Sbjct 185007 GAAGATGGCAAGAAAATCGAGCCAATGGTATATGCCCCAATTCTTCCCATGGTACTGGTC 185066 Query 32377 AACGGTGCAGAAGGCATCGGAACGGG 32402 |||||||| || || || || || || Sbjct 185067 AACGGTGCCGATGGTATTGGCACAGG 185092 >seq237 Length=369279 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| |||||| || | ||| Sbjct 287369 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCATCGGACACCATC 287428 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || || |||||||| | Sbjct 287429 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 287488 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| |||||||||| || ||||| | ||||| || |||| ||| Sbjct 287489 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 287548 Query 27595 G 27595 | Sbjct 287549 G 287549 >seq119 Length=1526710 Score = 100 bits (110), Expect = 3e-16 Identities = 257/386 (67%), Gaps = 9/386 (2%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| | || || | |||| ||||||| Sbjct 630152 AAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTCTACCTTTGCTCAGCGT 630093 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | |||||||| || || || || ||||| || | || ||| || ||| Sbjct 630092 CTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 630033 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| ||||| ||||| |||||| ||||| |||||||| || ||||| Sbjct 630032 TGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGT 629973 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAA-GGACAAACC 64898 || ||||| || ||| || ||||| | ||| | |||||||| |||| || Sbjct 629972 GATGAGGGTCTTCACACCGACTTTGCCTGTCTCCTCCACTCTCACCTCAAGGGACGTGCC 629913 Query 64899 ATCACATGGGACTATAATTGATATAGTAAAATCG--GCTGTAGAAATTGAAAAGGAATTC 64956 | || | || || || || || | || || || ||||| |||| || Sbjct 629912 AGCA-AACAGATGATCCAGGACAT--TATCACCGATGCCGTTTCTATTGAGCAGGAGTTT 629856 Query 64957 ATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTAT 65016 |||||| || || || ||| || |||||||| | || | ||||| ||||| Sbjct 629855 CTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTAC 629796 Query 65017 ATCGAATTTGTAGCAGATCGCCTGCT 65042 |||||||| || || ||||| || || Sbjct 629795 ATCGAATTCGTCGCTGATCGTCTCCT 629770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308354011440