Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31]
287 sequences; 36,399,802 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq180 246 3e-60
seq267 185 1e-41
seq272 170 2e-37
seq135 132 5e-26
seq237 114 1e-20
seq119 100 3e-16
>seq180
Length=606450
Score = 246 bits (272), Expect = 3e-60
Identities = 1131/1762 (64%), Gaps = 68/1762 (4%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| |||||||| || ||||||||| | ||||
Sbjct 291540 GCCTGTGTACGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGC 291481
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| ||| ||| | | || |||| || |||| ||||| |||||||||||||||
Sbjct 291480 ATGCTGGTGATCTTGCCCATGGTAGGGTCCTTCATGTGAATGTTGAGAGACTGAGACTGA 291421
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT-TTCAATAATTGACTTTTGTGGAATTTCCCA 80210
||||| || ||||| || || ||||| | || | || | || | ||| |||||
Sbjct 291420 TCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAACCTGTC-GCTGAGAAATCTCCCA 291362
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || |||| |||| | ||| | || |||| | | | | |
Sbjct 291361 CACAGTCTTGTACAGAGCCTT---GATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGA 291305
Query 80268 ACCGTCCTTTACA---ATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||||| | || || | || |||| || | ||| | ||| | | | ||
Sbjct 291304 ACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACAAG 291245
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
||| || | ||| | | ||| || | || ||||| || || ||| || || |
Sbjct 291244 ATCCTTGAGAAGCCAGGGGTTGACAA-CCTG--GAACTCGCCAGCAAGGACTCGGCGTTG 291188
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | |||||||||||||| |||||||| || || ||||| | || ||
Sbjct 291187 GTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAAGTACT 291128
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| || | || | ||| || || | ||||| |||||| ||||||
Sbjct 291127 GGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTC 291068
Query 80502 GCGCA---AATCTGA---CCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGC 80553
|| | || | ||||| ||| | ||| |||| |||||||||| |
Sbjct 291067 TCGGAGGGGTTCCCAGTCCCAAAGGTCA----GAGGGCT-TGACATTCCACATGTCGAAC 291013
Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613
|| | || ||||| || || || || ||| ||| || ||| || || ||| |||
Sbjct 291012 TGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTA 290953
Query 80614 GCCAGCT-CACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672
|| || | |||| ||| ||||||| ||||| || ||| ||| |||| ||||||
Sbjct 290952 GCGAGTTGCACA-GACGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTT 290894
Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732
|| | || |||| || || || | || || | | ||| | ||||| ||
Sbjct 290893 CAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAGGAAGGCATCAGCAAG 290834
Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAA 80791
|| || || || | | || || ||||| ||| |||| | | || ||||| | |
Sbjct 290833 ACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTT-GCTGTTACGAGCCTCTTGGA 290775
Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851
||||| ||| ||||||| ||||| ||||| ||| || | || || |
Sbjct 290774 CAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACGACTTGAGTGACCT 290715
Query 80852 CATGAAGTTTCTGAAAGTCGAA--TTGGTTCCCC----TTCACAAATGCCGGAAGGCTCA 80905
| || || |||| |||||| | | || | || | || | || || ||
Sbjct 290714 CGTGCAGCTTCTTGAAGTCGTAGCAAGCATCTTCATAGTTGATGAAAGAGGGCAGAGACA 290655
Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGC 80965
||| || || ||||| || || ||||| |||| | | || | ||| || ||||
Sbjct 290654 AGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGC 290595
Query 80966 ACAAATTAGAAGACTT--AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGC 81023
||| || || ||| || ||||| ||||| || ||||| |||| |||||
Sbjct 290594 ACAGGTTGGA--GCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTG 290537
Query 81024 GTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083
||||||||| |||| | ||| | |||||||| ||| | || || ||||||| |||
Sbjct 290536 ATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCA 290477
Query 81084 AATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGC 81143
|| || | ||||||| |||||| || || || | | ||||| ||||
Sbjct 290476 AAGCTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 290417
Query 81144 TTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202
| || || | | |||||| | || |||| ||| | ||||| |||||||||||||| |
Sbjct 290416 AGCCTCAAATTCGTCACCGTAGCAG-TCAGCAAGGCCAGGGCATTCGTTAGGGCACATGA 290358
Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262
| ||| ||| || |||| ||| |||||||||| ||||||||||| || ||
Sbjct 290357 GAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTA 290298
Query 81263 TGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAA 81320
||||||||| || |||||| ||||||| | ||| || || || | || || ||
Sbjct 290297 AGAACAGGTCACG--AGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 290240
Query 81321 GTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCG 81374
|| | || ||| || ||||||||||| || || | ||||| | || | ||||
Sbjct 290239 CTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 290180
Query 81375 ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434
| |||||||||| |||||||| ||||| ||| || ||||||| ||| || | |||
Sbjct 290179 A---CCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGAT 290123
Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTG 81492
||| | || ||| || ||||| |||| || || |||| || | | ||
Sbjct 290122 ACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGC 290063
Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552
|| || || || ||||| | | ||| |||||| ||||| || | ||| ||
Sbjct 290062 GTTCAA--GCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 290005
Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612
|| || || || ||||| || | ||||| |||| | ||| || ||| | ||||||
Sbjct 290004 TAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGG- 289946
Query 81613 CTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670
| | ||| ||||| ||||| | || ||| | || ||| |||| | | ||||||
Sbjct 289945 -CTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACA 289887
Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730
| |||| || || ||| ||| || |||||||||||| || || | ||| || |
Sbjct 289886 TGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGATTCCAACAGCGACTC 289827
Query 81731 GCATAAACATGTACTG-GGGCG 81751
|||| | ||| | ||| |||||
Sbjct 289826 GCATGATCATATGCTGCGGGCG 289805
>seq267
Length=334782
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||||||||||||||| || |||||||||||| |
Sbjct 143546 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCT 143487
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || ||||| | || || |||||||||||||| || ||||| || |||
Sbjct 143486 GATACTATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 143427
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | ||||| || || ||||| |||||||||| || ||||| | ||||| ||
Sbjct 143426 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 143367
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||||| || || ||| | || ||||| |||||
Sbjct 143366 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGCCTTCGTGGTGG 143320
Score = 178 bits (196), Expect = 1e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| | ||||||||||||||||| |||||||| |||||| || | || |
Sbjct 143252 GTCAAGACCTTGACCGGCAAGACTATTACCCTTGAGGTCGAGTCATCCGACACTATCGAC 143193
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || || |||||||||||||| || ||||| || |||||||| | |||
Sbjct 143192 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATT 143133
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| || || ||||| |||||||| | ||| ||||| | ||||| || |||| ||||||
Sbjct 143132 TTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAGGAA 143073
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|| || ||||| || ||| | |||||||| ||||||||
Sbjct 143072 TCAACCCTTCACCTGGTCCTTCGTCTTCGTGGTGGACA 143035
>seq272
Length=530880
Score = 170 bits (188), Expect = 2e-37
Identities = 178/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 332912 ATCATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 332853
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||||| || | ||| | || || |||||||||||||| || || || |||
Sbjct 332852 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGAC 332793
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTA 27581
|||||||| || || |||||||||||||| |||||||||| || ||||| ||| |||||
Sbjct 332792 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTA 332734
Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| ||||| ||||| | ||| | || ||||| |||||
Sbjct 332733 CAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGCCTTCGTGGTGG 332683
>seq135
Length=515129
Score = 132 bits (146), Expect = 5e-26
Identities = 299/446 (67%), Gaps = 4/446 (1%)
Strand=Plus/Plus
Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018
|| ||| || |||||| || |||||| ||||||| ||||||||||| || ||
Sbjct 184649 CATGCGATCTATTCCATCTGTTCTGGACGGATTCAAGCCCGGTCAGCGCAAGGTCATCTA 184708
Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078
||| ||| |||||| ||| || | |||| |||||| | | || | || || ||
Sbjct 184709 CGCGTGCTTCAAGAGAAACTTGATCAAAGACAAGAAGGTCGTTGAATTGGCAGGTTATGT 184768
Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138
| | || || ||||| || |||||||| || ||| ||||| |||||| | |||
Sbjct 184769 GTCCGAACAGACGGCATACCACCACGGTGAACAGTCACTCCAACAGACCATTATTGGCCT 184828
Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198
|||||||||||| || || | || ||| | |||| || || || |||| | || ||
Sbjct 184829 TGCTCAGAACTTCGTGGGCTCGAACAACATCAACTGCCTGGAACCCAGTGGAAACTTCGG 184888
Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCG--TCTC 32256
| || || || ||||| |||||||| || | ||||||| |||||||| | ||
Sbjct 184889 TTCTCGACTTGCAGGTGGTTCTGATGCTGCCAGTCCTCGTTACACTTTCACCCGACTATC 184948
Query 32257 GCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTT 32316
|| |||||| | ||||| || || |||| ||| || | || | || ||| |
Sbjct 184949 GC-CCTTCG-CCCGCAAAATCTTTCACCCTATGGATGAGCCCAACCTGTTGCACCATTAT 185006
Query 32317 GATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTG 32376
|| || || || ||||||| || | || || | ||||| ||| | ||||
Sbjct 185007 GAAGATGGCAAGAAAATCGAGCCAATGGTATATGCCCCAATTCTTCCCATGGTACTGGTC 185066
Query 32377 AACGGTGCAGAAGGCATCGGAACGGG 32402
|||||||| || || || || || ||
Sbjct 185067 AACGGTGCCGATGGTATTGGCACAGG 185092
>seq237
Length=369279
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || |||||||| || || || ||||| |||||| || | |||
Sbjct 287369 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCATCGGACACCATC 287428
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| || || || || |||||||| |
Sbjct 287429 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 287488
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || || || ||||| |||||||||| || ||||| | ||||| || |||| |||
Sbjct 287489 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 287548
Query 27595 G 27595
|
Sbjct 287549 G 287549
>seq119
Length=1526710
Score = 100 bits (110), Expect = 3e-16
Identities = 257/386 (67%), Gaps = 9/386 (2%)
Strand=Plus/Minus
Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719
|| ||||| || ||||||||||| ||||| | || || | |||| |||||||
Sbjct 630152 AAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTCTACCTTTGCTCAGCGT 630093
Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779
|| | |||||||| || || || || ||||| || | || ||| || |||
Sbjct 630092 CTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 630033
Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839
||||| || ||||| ||||| ||||| |||||| ||||| |||||||| || |||||
Sbjct 630032 TGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGT 629973
Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAA-GGACAAACC 64898
|| ||||| || ||| || ||||| | ||| | |||||||| |||| ||
Sbjct 629972 GATGAGGGTCTTCACACCGACTTTGCCTGTCTCCTCCACTCTCACCTCAAGGGACGTGCC 629913
Query 64899 ATCACATGGGACTATAATTGATATAGTAAAATCG--GCTGTAGAAATTGAAAAGGAATTC 64956
| || | || || || || || | || || || ||||| |||| ||
Sbjct 629912 AGCA-AACAGATGATCCAGGACAT--TATCACCGATGCCGTTTCTATTGAGCAGGAGTTT 629856
Query 64957 ATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTAT 65016
|||||| || || || ||| || |||||||| | || | ||||| |||||
Sbjct 629855 CTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTAC 629796
Query 65017 ATCGAATTTGTAGCAGATCGCCTGCT 65042
|||||||| || || ||||| || ||
Sbjct 629795 ATCGAATTCGTCGCTGATCGTCTCCT 629770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570308354011440
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