Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31] 287 sequences; 36,399,802 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq180 176 6e-39 seq119 140 5e-28 >seq180 Length=606450 Score = 176 bits (194), Expect = 6e-39 Identities = 1162/1846 (63%), Gaps = 43/1846 (2%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || ||||| || || | || || | | |||||| || |||||||| ||||| || ||| Sbjct 291564 GTGAACTGGATAGGGGCAGCAGCAGCCTGTGTACGGAGGTAGTACATGCCAGTCTTGAGA 291505 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 || || |||| || ||| |||||||| || | ||| |||| || || Sbjct 291504 CCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGTAGGGTCCTTCATG 291445 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 ||||| || | |||||| ||||| ||||| || || | ||||| ||||| | | | Sbjct 291444 TGAATGTTGAGAGACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACA 291385 Query 76962 ATG-GTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG 77020 | ||| | ||| ||| ||||| | ||| ||| | | ||||| || | || | Sbjct 291384 ACCTGTCGCT-GAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGAT 291326 Query 77021 GTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATT 77077 ||| | | || || || ||||| ||| | || || ||||| ||| |||| Sbjct 291325 GTTGGGGATGTTCTGGATAGAACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGA 291266 Query 77078 CCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCC 77137 ||| | | | || | | | | || || || || || | || || || || Sbjct 291265 CCAAAGACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCC 291206 Query 77138 AGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCC 77197 || | |||| || ||| || || ||| || || || | |||| ||||| || Sbjct 291205 AGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCC 291146 Query 77198 CAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACC 77257 | ||| || | |||| || || |||||||| || || | | ||| || | || ||| Sbjct 291145 AAGAATCTGCGAAGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACC 291086 Query 77258 ATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATC 77317 || || ||| | ||| || || ||| |||||||| || || || |||| Sbjct 291085 GTGAGTCTTGACATCCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAGGGCTTGACATT 291026 Query 77318 CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGG 77377 ||| | ||| | || ||||| || | | ||| || || || | || || || Sbjct 291025 CCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGG 290966 Query 77378 TCCTTCTGTTTCAGCTAGTT-CACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGA 77436 ||||| | ||| |||| |||| || | || ||| || || || |||| Sbjct 290965 ACCTTCCTCCTTAGCGAGTTGCACAGA-CGTAGTAAGGGCAGCGTGGTAGATGGTCTCGA 290907 Query 77437 AAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAG--AAT 77494 | || | ||| || || || | || ||| | ||||| || ||| | | || Sbjct 290906 AGATTTGCTTGTTCAGCTCACGAGCCTCAGGAGACTCAAAGGGC--ATGCGGAGGGCAAG 290849 Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554 |||||||| || | || || || |||| |||||| |||| || | | | ||| | Sbjct 290848 GAAGGCATCAGCAAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTT 290789 Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAAC 77614 ||| ||| | | ||| || | || | ||| || || || || | ||| | ||||| Sbjct 290788 ACGAGCCTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAAC 290729 Query 77615 TACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT--ATA----ACAAA 77668 |||| | || || | || || || || | | ||||| ||| | || Sbjct 290728 GACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTAGCAAGCATCTTCATAGTTGATGAA 290669 Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTG 77728 | || || | || || || || ||||| || ||||||| || | | |||| Sbjct 290668 AGAGGGCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTC 290609 Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788 || ||||| || || || || | | ||| || || || || | |||||| ||||| Sbjct 290608 AATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTT 290549 Query 77789 TTTATTGCA-TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGA 77847 |||||| ||| ||||| || || || || || | ||||| || |||| | || | Sbjct 290548 GCGATTGCAGTGA-TCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAA 290490 Query 77848 TAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCGCCT---CTCTCTT 77903 ||| | | ||| | | ||| ||| || || ||| ||| | | | |||||| Sbjct 290489 GAATGGCGTACCAAA-GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTC 290434 Query 77904 TCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 || || || ||| | |||| |||||||| || || | ||| | | ||||||| Sbjct 290433 TCGTACTTTTCGTACAGAGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGC 290376 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 |||| || |||||||| | | ||| || || | | || || || ||||| || |||| Sbjct 290375 ATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGAT 290316 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCT 78081 |||| ||||| ||||| | || || || || | | || || || || ||||| Sbjct 290315 CAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCT 290256 Query 78082 TTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAA 78141 || ||||| || ||||| | | || | |||||||| || || || || || | Sbjct 290255 TTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGG 290196 Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 | |||||||| || ||||| ||||| || | || | || ||||| || | || | || Sbjct 290195 CACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCA 290136 Query 78202 ACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC 78261 ||| |||| |||||||| || || ||||| || || | || ||| ||| | || | Sbjct 290135 GCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCAC 290076 Query 78262 GAATATTACTAATGGAT-ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 | || | | | | | || || || || |||||||| || || | || ||| Sbjct 290075 GGAT-TCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTC 290017 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || | |||||||||||||| || || ||||| ||| |||| | || ||| || || Sbjct 290016 TTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAT 289957 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCAT 78440 || | ||| | || ||| || || || ||||| || || |||||| || || | Sbjct 289956 GAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAAC 289897 Query 78441 TTTTCAGAAAGTAGATTGTATGT-TTCAATA---GCTGATTCTATGTC-CCATTGATGAA 78495 || || | || |||||||| | ||| | ||| | | | ||| || | | Sbjct 289896 TTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATAT-CGTCACCCCAG----A 289842 Query 78496 TTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTT 78555 |||| || || || ||||| | ||||||||| || | ||| | | || | || | Sbjct 289841 TTCCAACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCT 289782 Query 78556 TCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 | |||||||||| | ||| ||| || |||||||||||||| Sbjct 289781 GTAGCAAGTATGATCTGGACAAGGTTCGGAAGCCAAAATAGTTGTA 289736 >seq119 Length=1526710 Score = 140 bits (154), Expect = 5e-28 Identities = 369/561 (66%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| ||||| || |||||||| ||||| | | ||| | ||||||||||| | || Sbjct 629943 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 630002 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 ||| ||||| || ||||| || |||||||| || || | || || | || ||||| Sbjct 630003 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 630062 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---G 48316 || || || ||||| ||||| || ||| | || | | | | | || | | Sbjct 630063 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGTAGAGTTCTTATCCTG 630122 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || |||||||| |||||||| | ||||| || || || | || || Sbjct 630123 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 630182 Query 48377 AAAGAGAAAGtttttttCATTGCTA---TCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || | | | | | || || | ||| ||||| || | || || Sbjct 630183 GAAGAG---GTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTA 630239 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 |||||||||| || || || || ||||| || || || || |||| || || | Sbjct 630240 TGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGG 630299 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 |||||| ||||| | ||||| ||| | | ||||||||| || || || || || Sbjct 630300 GATCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGC 630359 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT---TTATT 48610 ||| || || || | | || || || |||| |||| ||||||| | || || Sbjct 630360 AGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTT 630419 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||||| | || ||| || || | ||| | || ||||||||||| || || |||||||| Sbjct 630420 CCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGC 630479 Query 48671 TTTTTTATACATATTCCATAT 48691 || || ||||| | ||| || Sbjct 630480 CTTCTTGTACATTTGCCAGAT 630500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666307875680