Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717855.1_202016-08-31]
287 sequences; 36,399,802 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq272 163 6e-35
seq267 163 6e-35
seq237 143 6e-29
seq119 107 4e-18
seq195 86.0 1e-11
seq180 84.2 5e-11
>seq272
Length=530880
Score = 163 bits (180), Expect = 6e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | ||| || || ||||||||||||||
Sbjct 332682 ACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 332741
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || |||||||| | || || ||||| ||
Sbjct 332742 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 332801
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || ||| | || || ||||| |||| || ||
Sbjct 332802 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 332861
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||||||||| ||||| | ||||| ||||| ||||||||
Sbjct 332862 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 332909
>seq267
Length=334782
Score = 163 bits (180), Expect = 6e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | || || || |||||||||||||| |
Sbjct 143319 ACCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 143378
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || ||||| || ||||| || || || ||| ||
Sbjct 143379 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGG 143438
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | |||||||| || || | || ||
Sbjct 143439 GATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATAGTATCAGATGACTCAAC 143498
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || || ||||| || ||||| ||||| ||||| ||||||||
Sbjct 143499 CTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 143546
Score = 149 bits (164), Expect = 1e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || ||||| ||||| || | || ||| || |||||||||||||| |
Sbjct 143038 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 143097
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || || ||||| || || || ||||| || ||||| || || || ||| ||
Sbjct 143098 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 143157
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|||||||||||||| |||||||| | || || | ||||||||||| || | |||||
Sbjct 143158 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCGACC 143217
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
|| || || || ||||| || ||||| ||||| ||||
Sbjct 143218 TCAAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGA 143254
>seq237
Length=369279
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || || ||||||||||| || || || ||||| ||||||
Sbjct 287547 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 287488
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || || || || || ||||||||||| |||||||| | || || | |||
Sbjct 287487 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 287428
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| ||||| ||||| ||||| ||||||| ||||| |||||
Sbjct 287427 ATGGTGTCCGATGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 287369
>seq119
Length=1526710
Score = 107 bits (118), Expect = 4e-18
Identities = 170/244 (70%), Gaps = 3/244 (1%)
Strand=Plus/Minus
Query 230167 TCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTA 230226
|||| || | ||| | | ||| ||||||| || || ||| | ||||| ||
Sbjct 629887 TCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGC 629828
Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286
|||||||||| | | |||||| ||| || ||||||||||| ||||||||| | |||
Sbjct 629827 TCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCG 629768
Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346
| || || | ||||| ||||| || |||| ||||| |||| || |||||| ||
Sbjct 629767 TTGCTCTCGNN---GAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACA 629711
Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406
| || || || ||||| ||||||||||| ||||| || || || || | | |||
Sbjct 629710 TCTCCCTTGGCGGCAAAACCAACTTCTTCGAGAAGCGCGTTGCTGACTACCAGAAGGCCG 629651
Query 230407 GTGT 230410
||||
Sbjct 629650 GTGT 629647
>seq195
Length=674302
Score = 86.0 bits (94), Expect = 1e-11
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710
|||| |||| | | || ||||| |||| ||||| || |||| | | ||||||||
Sbjct 560396 GTGAGTAATGATGATGACACCACCCTCGAACTTCTTCAGGGCCTTGGAAAGAGCACCGAG 560337
Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770
| || ||||| | | ||||||| ||||| ||||||||||| | |||||| | |||||
Sbjct 560336 AGAGTCACGGTCAAGATAGTTGGTAGGCTCGTCAAGAACGATAAGATGGGGTCGCTGCCA 560277
Query 315771 TAGAGC-GGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAG 315829
||||| ||| | | || ||| | || ||||| ||||| ||||| || ||||
Sbjct 560276 -AGAGCAAGCGGCAAGGACAGTCTTGACACGCTGACCACCGGACAGACCACGCATACGAG 560218
Query 315830 AATGAG 315835
| ||||
Sbjct 560217 AGTGAG 560212
>seq180
Length=606450
Score = 84.2 bits (92), Expect = 5e-11
Identities = 188/280 (67%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 299559 CATCGACGTCATGGCATACCCCATCAAAGAAGCGCAGA-CATCGAACATGCTGCGCCGCC 299617
||||||||||| ||||| || |||| || | | || | ||||||| | ||| |
Sbjct 290752 CATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGC-AACATGCGTCACCGAC 290810
Query 299618 CCATCGGCGTGGGGGTACAAGGACTTCAGGATGTGTTCTTCAAACTGAAGCTCCCATTTG 299677
|||| || | || || ||||| ||| |||| ||| | || | || ||||
Sbjct 290811 CCATTGGTCTTGGTGTGCAAGGTCTTGCTGATGCCTTCCTTGCCCTCCGCATGCCCTTTG 290870
Query 299678 ACTCTCCGGAGGCCAGGGATCTTAACCGGGAAATCTTCGAGCATATCTACTACGCTGCCG 299737
| ||||| ||||| | || || ||| | ||||||||||| |||||| ||||||||
Sbjct 290871 AGTCTCCTGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCACGCTGCCC 290930
Query 299738 TTGAAGCGTCGGTAGAACTCGCGGAAATCCACGGGCCTCACCCCACCTTCGAAGGGTCTC 299797
|| |||| || ||||||| | | || || || |||||||| | || || |
Sbjct 290931 TTACTACGTCTGTGCAACTCGCTAAGGAGGAAGGTCCCTACTCCACCTTCAAGGGCTCCC 290990
Query 299798 CTGCAAGTAAGGGCATCCTCCAATACCACTTGTGGGATGT 299837
|||| | |||| || ||||| | | || ||||| ||||
Sbjct 290991 CTGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGT 291030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046735350943698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |