Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 2e-12 >seq4 Length=3324183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 354/553 (64%), Gaps = 25/553 (5%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| || ||||| || || |||| |||||||| || || ||| Sbjct 1758205 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCGGGCATGAGACCACGCTTC 1758264 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | |||||| | ||| ||||| |||||||| |||| || || Sbjct 1758265 TTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGGCAGCGAAG 1758324 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 || | | || | ||| | | | ||| || | | |||||| |||| || Sbjct 1758325 GCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCA 1758384 Query 17165 GCTTTTTGCTTT---ATGCAATCCATCGTTTCTATGGCCTTAAA----TAATTTCTCTTT 17217 || || |||| ||||| || || || ||||| || || || ||| || Sbjct 1758385 GCCTT---CTTTCGGATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTAGGTTCGCTGG 1758441 Query 17218 TTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTT 17277 | | | || | || || || |||||||| ||| ||| | |||||||| ||||| Sbjct 1758442 G--CGG--GCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTT 1758497 Query 17278 CTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTA 17337 |||||| ||||| || ||||| ||||| || || || | || || || || | Sbjct 1758498 CTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCACT 1758557 Query 17338 GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATAT 17397 ||| || || | || || ||||| || ||||| || || ||||| || || | || Sbjct 1758558 GAAACGCTCGACGAGGTTCTCGTTGACAATGCCATCTGAGGCAGCGAAGAAAGCAAGGAT 1758617 Query 17398 ATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATC 17451 ||| | ||| | | ||||| | || || ||| |||||| | | ||| Sbjct 1758618 ATGAGAGACGAAGAACTGCTCGTCAGCAGTCAG---GCGGTTGTTCCAGTCGTGGAGATC 1758674 Query 17452 TTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATT 17511 ||||| | ||| | || || | ||||| || |||| | ||||| || ||||| | Sbjct 1758675 CTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTG 1758734 Query 17512 CCAAA--TATCAT 17522 ||||| |||||| Sbjct 1758735 CCAAATCTATCAT 1758747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517542954048120