Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15 187 3e-42 seq4 116 5e-21 >seq15 Length=1128247 Score = 187 bits (206), Expect = 3e-42 Identities = 713/1103 (65%), Gaps = 30/1103 (3%) Strand=Plus/Minus Query 62994 ATTATCTCAGTGCAAAGATT---ACTACACTTGATAGTTCCTAAATTTTGTTGATTACTC 63050 || || ||||||||||| || ||||| ||| || || | || | ||| || ||| Sbjct 832486 ATAATTTCAGTGCAAAGGTTGGAACTACG---GATGGTACCGAGGTTCTTTTGGTTGCTC 832430 Query 63051 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 63110 || ||| || |||||||| || || |||||||| | || || ||| |||| | || Sbjct 832429 TTGCGGTTGCAAGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCA 832370 Query 63111 ATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT-- 63167 | ||| || | ||||| | || ||||||| || | ||| | |||| | || Sbjct 832369 AGAATGGCGTACCAGA-GCTTCTGAGCCTTAATGGTC---TTGCGAC-CCTTGCCCTCCT 832315 Query 63168 --TCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223 ||||| | ||| | | | |||||||| ||||| | | | | | | ||| Sbjct 832314 TCTCGTACTTTTCGTACAGAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGG 832257 Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63283 || |||| || ||||||| | ||| || |||| | | || || ||||| || || Sbjct 832256 GCACTCATTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAG 832197 Query 63284 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343 |||||| |||||||| || | || || || | | | ||||| || || || Sbjct 832196 ATCAGGGATCCAAAGGGCAAGGAAAAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTT 832137 Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403 ||| ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | Sbjct 832136 CTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAA 832077 Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463 | | || || || ||||| || ||||| || | || | ||| ||||| || | || | Sbjct 832076 AGCACCGGGTCGCTTGTTGCCGCCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACG 832017 Query 63464 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGC 63523 | ||| |||| || ||| || ||| |||| |||||||||| ||| || ||| | || Sbjct 832016 AAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGC 831957 Query 63524 ACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 ||| ||| | | ||| | |||| || || || ||||| || ||||| | || || Sbjct 831956 ACGGATACGGTGCACATTCA--GACCAATACCACCAGCCATCTTGGAGATCATGGCACAG 831899 Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 || | || || ||||| || || || || ||||| |||| | || | || || Sbjct 831898 GTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCATCCTTCATATCAACCAAGAAGCAA 831839 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 |||| |||| | ||| || || ||||| || | || || ||||| ||||| || Sbjct 831838 GATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGCGTGGGGGAAGCATGCGTGAAG 831779 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAAT 63760 | || ||| | |||||||| ||||| | || || ||||| || || | Sbjct 831778 AACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-T 831720 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || || | |||||||| | |||||||||||| | || ||||| || || || || Sbjct 831719 ACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTT 831660 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 | | ||| ||| |||||||| || || ||||| || | |||| || || || || Sbjct 831659 GAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTC 831600 Query 63881 GTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACT 63940 || | ||| | || | | || ||||||| | | || || || | Sbjct 831599 ATAGACAATGGCAGAGTCCAACTCCTCCTTATGTCGCATGACGCACTCATAAGTCTCCTT 831540 Query 63941 TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC-CTC-C 63998 ||| || || || || | || || || || || ||||||| | | | || ||| | Sbjct 831539 TGAGATCATGGGCGACGGCCGGCCGTTCTTGGGGTTCACATAGTGGTAGAGGTCGCTCAC 831480 Query 63999 ATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCG 64058 | || || || | || || || | |||||| || || || | ||| || | |||| Sbjct 831479 AACAGCGGAC--CATTGCTTCTTGGTCTGCTTGTGAAGGTTGGAGACGGCAATGCGGGCG 831422 Query 64059 GCTAGAATGGCATAATCCGGATG 64081 || ||||||||||| || ||||| Sbjct 831421 GCAAGAATGGCATAGTCGGGATG 831399 >seq4 Length=3324183 Score = 116 bits (128), Expect = 5e-21 Identities = 545/857 (64%), Gaps = 24/857 (3%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || ||||| || | ||||| || ||||| || || || || || | | || || || Sbjct 1757893 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTC 1757952 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGA-AAT 33409 |||||||| || || || ||||| | ||||| | || | | |||| || || Sbjct 1757953 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGT-TGCCAAGAGCGACAAG 1758011 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 | | ||| |||||||| || || || ||||| | ||| | ||||| || | ||| Sbjct 1758012 GAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAG 1758071 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | ||||||||| |||| || || || || ||||||| || |||| || || || Sbjct 1758072 GGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGAT 1758131 Query 33530 A-----AATCTAACGGTTTCTT-CACT-CGGTGGATGTAATAAATGTTTAAACATCAAAC 33582 | |||| | || || ||| | | || || | | | | | | Sbjct 1758132 ATCCTGAATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGG-------AGGAGGC 1758184 Query 33583 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTC 33642 | || || || ||| ||||||||||| | | || | ||||| || || || || | Sbjct 1758185 AGGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGAC 1758244 Query 33643 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGA 33702 ||||||| || |||||||| || ||||| || || || ||||| | || ||||||| Sbjct 1758245 CGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGA 1758304 Query 33703 TTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTA 33759 | || || || ||||| ||||||| || | || || | || | | || || | Sbjct 1758305 TACCCTCAACGGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGA 1758364 Query 33760 TCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||| | || ||||| || ||||||||| | || || || || || ||||| || Sbjct 1758365 TCCATCGGATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATAGTGTCAATGGCGTTG 1758423 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||| ||| || | || || | || || ||||| | || || | Sbjct 1758424 AAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTC 1758483 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || |||||||| || || ||||| || |||||||| || | |||||||| ||| Sbjct 1758484 TCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATC 1758543 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || || || || || | | || || || || || ||||| ||| || Sbjct 1758544 TGGACCTCGCCACTGAAACGCTCGACGAGGTTCTCGTTGACAATGCCATCTGAGGCAGCG 1758603 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAA 34055 || || || | | ||| | || | | ||||| | || | | || ||||| Sbjct 1758604 AAGAAAGCAAGGATATGAGAGACGAAGAACTGCTCGTCAGCAGTCAGGCGGTTGTTCCAG 1758663 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 || | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 1758664 TCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTC 1758723 Query 34116 TTATACATATTCCAGAT 34132 || ||||| | ||| || Sbjct 1758724 TTGTACATTTGCCAAAT 1758740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814380057520