Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq4 84.2 2e-11 >seq3 Length=3549891 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | |||||||| | ||||| | ||||||||| | | Sbjct 3006909 ATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 3006968 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || ||||| ||||| || || || |||||||||||| Sbjct 3006969 GATACCATTGATAATGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATCAA 3007028 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||| || | | ||||||||||| || |||| ||| | ||| || ||| Sbjct 3007029 CAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGTCGAACTCTTTCCGACTACAAC 3007088 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || |||||||| Sbjct 3007089 ATCCAGAAGGAATCTAC 3007105 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || ||| | || |||||| | ||| |||||||| | || || Sbjct 3006705 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCATCCGATACCATCGACAATGTTAAGTCG 3006764 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||| || || || ||||| || || ||| | ||||| | | || ||| Sbjct 3006765 AAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTGATCTTTGCTGGAAAG 3006824 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||| | | ||| | ||| || |||||||| || |||||||| ||||| Sbjct 3006825 CAACTCGAAGACGGCCGAACTCTTGCCGACTACAACATTCAGAAGGAATCTACCCTTCAT 3006884 >seq4 Length=3324183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || |||| ||| | || || ||| | Sbjct 2716708 CAAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTC 2716649 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||||||||| | ||||| ||||| ||||| || ||||| || ||||| Sbjct 2716648 TTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 2716589 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || |||||||| ||||| |||| | | | | | ||||| || Sbjct 2716588 CCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 2716529 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 2716528 CAACATCCAGAAGGAGTCCAC 2716508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933856903395