Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq4 114 1e-20 seq7 82.4 6e-11 >seq3 Length=3549891 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || | ||||| ||||| || | || Sbjct 3006909 ATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 3006968 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || |||||||||||||||||||| ||||||||| Sbjct 3006969 GATACCATTGATAATGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATCAA 3007028 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| || | |||||| || || | ||||| |||||| Sbjct 3007029 CAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGTCGAACTCTTTCCGACTACAAC 3007088 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | || || ||| | || | || || ||| Sbjct 3007089 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTACGTCTTCGTGGTGGT 3007136 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | || Sbjct 3006399 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 3006458 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| |||||||||||||| || ||||| || Sbjct 3006459 GACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCAG 3006518 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || |||||||| ||| | ||||| |||||| |||| ||||||||| Sbjct 3006519 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAAC 3006578 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| || || ||||| | ||| | ||| Sbjct 3006579 ATTCAGAAGGAGTCCACTCTTCATCTTGTT 3006608 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || | |||||||| || ||| ||| | Sbjct 3007137 ATGCAGATTTTCGTGAAGACTCTCACTGGCAAGACCATTACTCTTGAGGTCGAATCCAGC 3007196 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| || ||||||||||| || || ||||| Sbjct 3007197 GACACTATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAG 3007256 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || || ||| | || ||| |||||| | ||| |||||| Sbjct 3007257 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTGAGCGACTACAAC 3007316 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | ||| | ||| | ||||| || Sbjct 3007317 ATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGTGG 3007363 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || | |||||||| | ||| || | || Sbjct 3006705 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCATCCGATACCATCGACAATGTTAAGTCG 3006764 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || || || || || || || ||||| || || Sbjct 3006765 AAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTGATCTTTGCTGGAAAG 3006824 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || ||| || | |||| ||||||||||| || ||||| ||| | ||| Sbjct 3006825 CAACTCGAAGACGGCCGAACTCTTGCCGACTACAACATTCAGAAGGAATCTACCCTTCAT 3006884 >seq4 Length=3324183 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || ||| |||| ||||| ||||| | Sbjct 2716707 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 2716648 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| || || ||||| Sbjct 2716647 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 2716588 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || ||||| ||| | |||||| ||||||| | ||| ||| Sbjct 2716587 CAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 2716528 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 2716527 AACATCCAGAAGGAGTCCACC 2716507 >seq7 Length=2761656 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| || || || || || | || ||| | Sbjct 1020135 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 1020194 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| || || || || ||||| || || Sbjct 1020195 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGACT 1020254 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || || || ||| | |||||| ||| || ||||||| |||||||| || || Sbjct 1020255 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 1020314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725907787085