Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4 134 3e-26 seq6 102 2e-16 seq5 96.9 7e-15 seq3 89.7 1e-12 >seq4 Length=3324183 Score = 134 bits (148), Expect = 3e-26 Identities = 385/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 1757917 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 1757976 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 1757977 GCCTTGTAGACCTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCGACGAACTCAATG 1758036 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| |||||| || | Sbjct 1758037 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGAGCCTCAGTGAGG 1758096 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 1758097 AACTCCTGCTCAATGGTGACGGCATCAGTAATGATATCCTGAATCATCTGCTTGCTGGCA 1758156 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 1758157 CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 1758209 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 ||| ||| ||||| ||||||||| | | ||| || ||||| | ||||| ||| |||| Sbjct 1758210 GTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCGGGCATGAGACCACGCTTCTTGAG 1758269 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | |||| ||| ||| | | |||||| || | | ||||| Sbjct 1758270 CCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGGCAGCGAAGGCAAC 1758329 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032 || |||| ||||| || ||||| | || | || | ||||| | ||||| Sbjct 1758330 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCAGCCTT 1758389 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | ||| || || || || || | ||||| || | |||| ||| || Sbjct 1758390 CTTTCGGATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTAGGTTCGCTGGGCGGGCTC 1758449 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | || | ||||| ||||| |||| || || ||| Sbjct 1758450 CTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATG 1758495 >seq6 Length=3118486 Score = 102 bits (112), Expect = 2e-16 Identities = 177/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||| || ||| |||| ||| ||||||||||| || | ||| ||||| | Sbjct 1926356 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAATTGTACCTTCTCTC 1926297 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 | || || |||| |||||||| || ||| || | ||| |||||||||| | | Sbjct 1926296 TTGCCTACGGTGCCAAGATTCTTCTCAACCAGACTCATCTCCGTCTCAAGCGTGGTCAGC 1926237 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| ||||||||| || | || ||| |||||| ||||||||||| | Sbjct 1926236 GTTACGGTCTTTGCGGTCCCAACGGTTCCGGAAAGTCCACTCTCATGCGCGCCATCAACA 1926177 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | || || || ||||| ||| ||||| | ||| || | || |||||| Sbjct 1926176 ACGAGCAGGTTGAGGGTTTCCCTAA-GCAGAGCGAGGTCAAGACTGTCTTCGTCGAGCAC 1926118 Query 279555 GACATCGACTCCTCT 279569 ||| | |||||| || Sbjct 1926117 GACCTTGACTCCGCT 1926103 >seq5 Length=3271200 Score = 96.9 bits (106), Expect = 7e-15 Identities = 169/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 218565 GCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGC 218624 ||| || || ||| |||| |||||||| ||||||| ||||| ||| || | | ||| Sbjct 313967 GCGATCCATCCCCTCCGTGCTGGATGGCTTCAAGCCGGGTCAGCGAAAGGTCATATATGC 313908 Query 218625 CGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATC 218684 | |||||| | ||||| || |||| | ||||||| | | || |||||||||| || Sbjct 313907 CTGCTTCAAGAGAAACCTTGTCAAAGACAAGAAGGTCGTTGAATTGGCTGGTTATGTCTC 313848 Query 218685 CGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGC 218744 || ||| ||| || |||||||||||| ||| || | || | ||| |||| Sbjct 313847 TGAGCAGACTGCCTATCACCACGGTGAGCAGTCTCTCCAACAGACTATCATTGGCCTGGC 313788 Query 218745 ACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTC 218804 ||| ||| || || |||||||| |||| ||| |||| || | || ||||| Sbjct 313787 CCAGAACTTCGTCGGTTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTC 313728 Query 218805 TCGTCT 218810 ||| || Sbjct 313727 TCGACT 313722 >seq3 Length=3549891 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || || ||||||||||||||||| || | || || || || | Sbjct 1902571 AGTTGGTTCCCTTTCTGGAGGCTGGAAGATGAAGCTGGCTCTGGCCCGAGCTATGCTCCA 1902512 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||||||||| || || || || ||||| || || ||||| | || ||||| | || Sbjct 1902511 GCGTGCCGACGTTCTCCTTCTGGATGAACCTACTAACCATCTTGATGTTGCCAACATCGC 1902452 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | ||||| | || | | |||||||| |||||| Sbjct 1902451 TTGGCTCGAGAACTACCT--CAAGTCTCATCCCGATATCACCAGTCTCATTGTTTCTCAC 1902394 Query 279873 GACTCTGGCTTCCTAGA 279889 ||||| || ||||| || Sbjct 1902393 GACTCCGGATTCCTGGA 1902377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831413813969