Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 389 7e-103 seq15 307 2e-78 >seq4 Length=3324183 Score = 389 bits (430), Expect = 7e-103 Identities = 601/846 (71%), Gaps = 18/846 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || ||||||| Sbjct 1758731 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTCTCCAAGGAT 1758672 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || ||| ||| |||| |||| ||| || | || | Sbjct 1758671 CTCCACGACTGGAA--CAACCGCCTGACTGCTGACGAGCAGTTCTTCGTCTCTCATATCC 1758614 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| ||||| || ||||| ||||| |||||||| | | | |||| Sbjct 1758613 TTGCTTTCTTCGCTGCCTCAGATGGCATTGTCAACGAGAACCTCGTCGAGCGTTTCAGTG 1758554 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | ||||| || |||||||||||||||||||| || |||||| Sbjct 1758553 GCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 1758494 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| ||| ||| || || || |||| |||||| ||| |||| | |||| | Sbjct 1758493 TTCACTCCGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGCCCGCCCAGCGAA 1758434 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || ||||| ||||| || || || ||||||||| |||||||| |||||||| Sbjct 1758433 CCTACCTCTTCAACGCCATTGACACTATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCA 1758374 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| || | ||| | | || | | || | || || ||||| | |||| Sbjct 1758373 TCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCCG 1758314 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTG 42782 | ||||| ||||||||| || ||||||||||| ||||||||||||||| || ||| Sbjct 1758313 TTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTC 1758254 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || |||||||| || || ||||| ||||| |||||| | |||||||| || || | Sbjct 1758253 TC-ATGCCCGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACT 1758195 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||||| ||| |||||| ||| | ||| | ||| || | | Sbjct 1758194 GACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTGCCAGC-AAGCAGATGAT 1758139 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | || ||||| || || ||||| || ||| ||||||||||||| || | || || Sbjct 1758138 TCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTTCC 1758079 Query 42962 C-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 | ||| |||| ||||||||||| ||||||||| ||||||| ||| |||||| | Sbjct 1758078 CTGTG-CCCTCCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTG 1758020 Query 43021 ACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 | | ||||| ||| | ||| || | ||||||| | | |||||||||| Sbjct 1758019 ATCGTCTCCTTGTCGCTCTTGGCAACGAGAAG-GTCTACAAGGCCACCAACCCCTTCGAC 1757961 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 || |||||||||||||| | | |||||||||||||| ||||||||||| || |||||| Sbjct 1757960 TTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGAC 1757901 Query 43140 TACCAG 43145 |||||| Sbjct 1757900 TACCAG 1757895 >seq15 Length=1128247 Score = 307 bits (340), Expect = 2e-78 Identities = 887/1345 (66%), Gaps = 45/1345 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||||||||||| ||| | || || Sbjct 833105 GTTGACAACCTGGAACTCACCAGCGAGAACACGGCGCTGGTAGATATTGGAGGTGTAGGG 833046 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 833045 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCAGTAGGCATAGGAGCAAG 832986 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||||||||| | | ||||| ||| || | | || |||| |||| | Sbjct 832985 GAGCAGACTGTTACGGATACCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 832935 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| ||||||| | | |||| | ||||||||||||||| || | |||| Sbjct 832934 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCAAACTGGAGGATACCCTCAG 832876 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 | |||| |||| | |||| | |||||| || || || ||||||| || | Sbjct 832875 AGGCGGGAGAACCCTTGAAGGTGGAGTAGGGGCCCTCCTCCTTAGCCAGCTGCACGGAGG 832816 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| || |||||||| |||||| |||||| | || || |||| | Sbjct 832815 CAGT-GAGGGCAGCGTGATAAATGGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCG 832757 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| || | || | ||| | ||||| || ||||| || || | Sbjct 832756 GGTGACTCGAAGGGCATACGCAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGA 832697 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||||| ||| ||| |||| | || | || | || || ||||| ||| | Sbjct 832696 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCAC 832638 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAA 244625 ||||| | |||||| |||||||| | | || | ||| ||| | | || | || | Sbjct 832637 ATCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTTGTGCAACTTCTTGA 832579 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 ||||||| | | | || ||| | || ||| | | | || | || Sbjct 832578 AGTCGTA---GCAAGCCTCATCGTAGTTGATGA-----AGGAGGGCAGAGACAGAGA--- 832530 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||| ||||||||||| || ||||| || | | ||||| || ||| || ||||| | Sbjct 832529 -GGCAAGGTTGCAGACAGCGACCTCGTCGGGGGCACAGTACTCGATAATTTCAGTGCAAA 832471 Query 244746 GGTTACTGCACTT--GATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 |||| | ||| |||||| || |||| || || ||| |||| |||||| || || Sbjct 832470 GGTTG--GAACTACGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCATC 832413 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||||||| || |||||||| |||||| | || | | || |||||| Sbjct 832412 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAGAG 832353 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||| | ||| ||||| |||||||||| |||||| |||||| || Sbjct 832352 CTTCTGAGCCTTAATGGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 832293 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||||||||| || || ||| | ||||| |||||| |||||||| || | Sbjct 832292 CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCATTGGGGCACATCAGTGT 832233 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || ||| | | || | || |||||| || || |||||||| ||||| |||| Sbjct 832232 CCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAA 832173 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 ||||| | || | ||| ||| || |||||| | || || | || || || Sbjct 832172 AAGGTCACGGGCACGGACCTCCTCCTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAA 832113 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| || |||||| ||||| | ||||| || | || ||||| ||||||||||| || Sbjct 832112 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCGCC 832053 Query 245164 CTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||| | ||| | ||||| |||||||| || || |||| || | || | Sbjct 832052 CTGGTCGA-CATAC---CGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCAT 831997 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGA 245277 | || |||||||| || |||||| | ||| | | | | | | ||| || Sbjct 831996 TCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACAT--T 831939 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 || || | || || || ||||||||| | ||| ||| |||||| || || || Sbjct 831938 CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGAT 831879 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 ||||| || ||||| |||||| | | || ||||| || |||| ||||||| || Sbjct 831878 TCCCTCAATACTGTCATCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGG 831819 Query 245398 GCTGCACGAGTTGAACAGAGTGGGG 245422 | ||| | ||||| || |||||| Sbjct 831818 GGTGCCGGCATTGAAGAGCGTGGGG 831794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334372065840