Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 214 2e-50 seq7 111 2e-19 seq3 104 2e-17 >seq4 Length=3324183 Score = 214 bits (236), Expect = 2e-50 Identities = 553/831 (67%), Gaps = 29/831 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 1757914 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 1757973 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| ||| | |||| | || |||| || || | || || |||||| Sbjct 1757974 GTGGCCTTGTAGACCTTCTCGTTGCCAAG-AG--CGACAAGGAGACGATCAGCGACGAAC 1758030 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCA-GCGCTTC 132800 || ||||| ||| |||| || | || | || || || |||| || | | || || Sbjct 1758031 TCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG-GCACAGGGAAGAGCCTC 1758089 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAAC-----GCGC 132855 ||||| || ||||| |||| ||| || || || | ||| ||| || || Sbjct 1758090 AGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATATCCTGAATCATCTGCTT 1758149 Query 132856 GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAG 132915 || | || || || ||| | || | | | ||| |||||||| || | Sbjct 1758150 GCTG-GCACGACCCTTG----AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGA 1758204 Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 |||||||| | || ||||| |||||| |||||||| ||||||||||| || || || Sbjct 1758205 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCGGGCATGAGACCACGCTTC 1758264 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 |||||||| || || | |||||| || ||||||| ||||| ||||| ||||| Sbjct 1758265 TTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGGCAGCGAAG 1758324 Query 133036 GCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATT 133093 || || || |||| | | || | || || || |||| ||||| || | ||||| | Sbjct 1758325 GCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGG--ATCCATCGGATGGCCCAGT 1758382 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153 | ||||| | | || ||| || || || || |||||||| || | | || ||| || Sbjct 1758383 CAGCCTTCTTTCGGATGCAGGGAATAGTGTCAATGGCGTTGAAGAG--GTAGGTTCGCTG 1758440 Query 133154 CCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTC 133211 || | | |||||||||||||||| || || | || ||||| | |||||| Sbjct 1758441 GGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTTCTC 1758500 Query 133212 CATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAA 133271 ||| ||| || |||||||| ||||| || |||||| | ||| || || | ||| Sbjct 1758501 CATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCACTGAA 1758560 Query 133272 ACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTG 133331 ||||||||| || || |||||||| ||||| || ||| ||||| || || || | || Sbjct 1758561 ACGCTCGACGAGGTTCTCGTTGACAATGCCATCTGAGGCAGCGAAGAAAGCAAGGATATG 1758620 Query 133332 CTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGA 133388 || ||| |||||| | ||| ||| | ||||||| | |||||||| Sbjct 1758621 AGAGACGAAGAACTGCTCGTCAGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCCTTGGA 1758680 Query 133389 CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || | |||||| | ||||| || || ||||| || || |||||||| Sbjct 1758681 GAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACAT 1758731 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 2716707 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 2716648 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| |||| Sbjct 2716647 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 2716589 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | ||| ||||| ||||| || || | |||||||| | |||||| Sbjct 2716588 CCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 2716529 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || |||| || || Sbjct 2716528 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 2716490 >seq7 Length=2761656 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 1020136 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 1020195 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||||||||| || Sbjct 1020196 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGACTG 1020255 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 1020256 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 1020315 Query 38433 G 38433 | Sbjct 1020316 G 1020316 >seq3 Length=3549891 Score = 104 bits (114), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || ||||| || | || |||||| | || Sbjct 3006909 ATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 3006968 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | || | | |||| || |||| ||||| ||||| ||||| |||| | Sbjct 3006969 GATACCATTGATAATG--TGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATC 3007026 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | || ||||| || || || || | || || || |||||||| Sbjct 3007027 AACAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGTCGAACTCTTTCCGACTACA 3007086 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| |||||| | || || || ||||| || ||| Sbjct 3007087 ACATCCAGAAGGAATCTACTCTCCACTTGGTTCTACGT 3007124 Score = 100 bits (110), Expect = 3e-16 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||| || | || ||||| ||| | Sbjct 3007137 ATGCAGATTTTCGTGAAGACTCTCACTGGCAAGACCATTACTCTTGAGGTCGAATCCAGC 3007196 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || || | || || ||||| || ||| | || | Sbjct 3007197 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGATAAGGAGGGTATCCCCCCTGATC 3007254 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| || || |||||||| || | |||||| | | |||||||| Sbjct 3007255 AGCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTGAGCGACTACA 3007314 Query 38422 ACATCCAAAAGGA 38434 ||||||| ||||| Sbjct 3007315 ACATCCAGAAGGA 3007327 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 38230 AACT-CTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTC 38288 |||| ||| || |||| | ||| |||| || || ||||| ||||| ||||||||| | Sbjct 3006666 AACTGCTTCTAACAAATCCTCATAGTCGTCAAGACCCTCACTGGCAAGACCATCACCCTT 3006725 Query 38289 GACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGA 38348 || |||||| | |||| | | | | | |||| || || | ||||| ||||| Sbjct 3006726 GAGGTCGAGTCATCCGATACCATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGT 3006785 Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 ||||| | ||||| ||||| || || | || || || || || || |||| || || Sbjct 3006786 ATTCCTCCTGACCAGCAGCGCCTGATCTTTGCTGGAAAGCAACTCGAAGACGGCCGAACT 3006845 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || |||||||||||| || |||||| | || || ||| | || || || Sbjct 3006846 CTTGCCGACTACAACATTCAGAAGGAATCTACCCTTCATCTCGTCCTCCG 3006895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170242866560