Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4 143 6e-29 seq3 136 9e-27 seq7 134 3e-26 >seq4 Length=3324183 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||| || || | ||||| ||| Sbjct 2716496 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 2716555 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 2716556 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 2716615 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| |||||||| | |||||| Sbjct 2716616 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 2716675 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 2716676 CCCGTGAGGGTCTTGACGAAAATCTGCAT 2716704 >seq3 Length=3549891 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| |||||||||||||| || ||||| |||||||| | ||||| | || || || Sbjct 3006608 AACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTC 3006549 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || | ||||| ||||| || || || || || ||||| || Sbjct 3006548 AAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATACCCTCCTTGTCCTG 3006489 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| || || ||||| || || || || ||||| | ||||| Sbjct 3006488 AATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTT 3006429 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 3006428 GCCGGTCAGGGTCTTGACGAAGATCTGCAT 3006399 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || || || || ||||| ||||| ||||||||||||| || |||||| Sbjct 3006889 ACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCGTCTTCG 3006830 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| || || || ||||| |||||||| || || ||||| ||| Sbjct 3006829 AGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGA 3006770 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||| || || || || |||||||| | ||||| Sbjct 3006769 ATCTTCGACTTAACATTGTCGATGGTATCGGATGACTCGACCTCAAGGGTGATGGTCTTG 3006710 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || || | || || |||| Sbjct 3006709 CCAGTGAGGGTCTTGACGA 3006691 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981 |||| | ||| ||||||||||| ||||| || || || ||||| ||| |||| || | Sbjct 3007354 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCG 3007296 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| ||||||||||| ||||||||||| || || || || || || || || || Sbjct 3007295 ACCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGGATACCCTC 3007236 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||| || ||| ||||| || || ||||| ||| || ||||| || Sbjct 3007235 CTTATCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCGCTGGATTCGACCTCAAGAGT 3007176 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | ||| || ||||| | ||||| Sbjct 3007175 AATGGTCTTGCCAGTGAGAGTCTTCACGAAAATCTGCAT 3007137 >seq7 Length=2761656 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||||||| ||||| |||||||||||||| |||||||| Sbjct 1020314 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 1020255 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||| |||||||| || || ||||| || ||||| || || || |||||| || || Sbjct 1020254 AGTCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1020195 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || |||| || || ||||| Sbjct 1020194 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1020136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109475785969703