Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 1e-12 >seq3 Length=3549891 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || || || | || | || || ||||| || ||||| || Sbjct 3006589 TCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 3006530 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | ||||||||||| |||||| |||||| Sbjct 3006529 ATCAAGCGTTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 3006470 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| ||||| || || || || ||||| || Sbjct 3006469 TCGATAGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACG 3006410 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3006409 AAGATCTGCAT 3006399 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || ||| ||||| ||||| ||||| ||||| |||| |||| || Sbjct 3007118 AACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGACCATCCTC 3007059 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || ||||| || || || | || | ||||||||||| Sbjct 3007058 AAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTTG 3006999 Query 34892 AATCTT-CTGTT----TGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| || || | | ||| ||||| | | ||| || || | || ||| Sbjct 3006998 GATCTTGCTCTTCACATTATCAATGGTATCGGAT-----GACTCGACTTCCAGAGTAATG 3006944 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || || ||||| |||||||| |||||| Sbjct 3006943 GTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCATA 3006908 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/185 (70%), Gaps = 10/185 (5%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| | ||| |||| | || || || || ||||| ||||| Sbjct 3006872 TTCCTTCTGAATGTTGTAGTCGGCAAGAGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAA 3006813 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC--- 34906 || || || |||||||| | || | ||||||||||| ||||||| || || Sbjct 3006812 GATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTAACATT 3006753 Query 34907 --GGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 |||| ||||| | | ||| || || | ||| ||||| || || ||||| ||| Sbjct 3006752 GTCGATGGTATCGGAT-----GACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 3006698 Query 34965 TTCAC 34969 || || Sbjct 3006697 TTGAC 3006693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631981802952