Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 120 2e-21 >seq3 Length=3549891 Score = 120 bits (132), Expect = 2e-21 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| ||| ||| || || || || || || ||||| Sbjct 3006902 ACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGAGT 3006843 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||| ||||||||||||||||| || || || || || ||||||||||| || Sbjct 3006842 TCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATACC 3006783 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| || ||| || || ||||| | || | | |||| Sbjct 3006782 CTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCGGATGACTCGA-CCTCAA 3006724 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 |||| || || || || ||||| ||||| |||| Sbjct 3006723 GGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 3006691 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | || || ||| ||| || | || || || | ||||| Sbjct 3007130 ACGAAGACGTAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 3007071 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| ||||||||||| |||||||| || || || |||||||| |||||||| || Sbjct 3007070 TCGACCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCGGGAGGAATACC 3007011 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| ||||| || ||| ||||| ||||| | || | | ||| | Sbjct 3007010 CTCCTTGTCTTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 3006952 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || || ||||| || || ||||| Sbjct 3006951 GAGTAATGGTCTTTCCAGTAAGGGTCTTGACAAAGATTTG 3006912 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| ||||| || |||||||| || |||||||| || || || ||||| Sbjct 3007292 ATCTTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGGATACCCTCCTT 3007233 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || |||||||| || || || ||||| || || | ||||| ||||| Sbjct 3007232 ATCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCGCTGGATTCGACCTCAAGAGTAAT 3007173 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||||||||| |||||||| || Sbjct 3007172 GGTCTTGCCAGTGAGAGTCTTCACGAAAATCTG 3007140 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| ||||||||||| || || || || || ||||||| ||||| Sbjct 3006620 ACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGT 3006561 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||| ||||| || || ||||| | ||||| || || || || || || Sbjct 3006560 GCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATACC 3006501 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| ||||| || ||||| || | || | | || | Sbjct 3006500 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGA-CCTCGA 3006442 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || ||||| || ||||| ||||| || || Sbjct 3006441 GGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTG 3006402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268161656005532