Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 132 6e-25 seq8 123 3e-22 seq15 105 8e-17 >seq4 Length=3324183 Score = 132 bits (146), Expect = 6e-25 Identities = 204/286 (71%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | |||||| || | || ||||||||||| || ||||| Sbjct 1758204 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCGGGCATGAGACCACGCTT 1758263 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | ||| || ||| ||||| ||||| ||||| || || Sbjct 1758264 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGGCAGCGAA 1758323 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | ||| |||| |||||||| | || | ||| | | |||||| || ||||| Sbjct 1758324 GGCAACGAGACGCTGGGCAAAGGAG--GA-GTCCTTATCCTGGATCCATCGGATGGCCCA 1758380 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTT 869417 ||| ||||| || | | | || | ||||| |||||| ||||||| ||| | | Sbjct 1758381 GTCAGCCTTCTTTCGGATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTAGGTTC-GCT 1758439 Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| || ||||||| ||||||||||| ||||| || |||||||| Sbjct 1758440 GGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTC 1758485 Score = 104 bits (114), Expect = 3e-16 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| |||||||||||||| | || ||||| Sbjct 1757890 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 1757949 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||||||| ||| ||| || |||||| Sbjct 1757950 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAGAGCGA-- 1758007 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || || || || ||||| ||||| |||||||| ||||||| | | ||||||||||| Sbjct 1758008 CAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGA 1758067 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 ||| || || || | ||| | | ||||| | ||| || |||||| || Sbjct 1758068 GGAGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATC 1758122 >seq8 Length=2675190 Score = 123 bits (136), Expect = 3e-22 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||| ||||||||||||||||| || ||| | || |||||| | || |||||||||| Sbjct 2267561 CCAACTATCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACCGTCGCCAACATGA 2267620 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||| ||||| ||||||||||| || || ||||| Sbjct 2267621 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACAT 2267663 >seq15 Length=1128247 Score = 105 bits (116), Expect = 8e-17 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||| || || || |||| ||| ||||| || ||||| || || | || || Sbjct 832055 GCCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATT 831996 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || |||||||| || || | ||| | ||| | || || | |||| | | Sbjct 831995 CGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACATTCAG 831936 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || || || || ||| ||||||||| | || || ||||| || |||||||| || Sbjct 831935 ACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCC 831876 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||| || ||| ||||||| || || | ||||| || || ||| || || | || Sbjct 831875 CTCAATACTGTCATCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGT 831816 Query 1630302 GCCGGCGTTGAAGAGCGTGGG 1630322 |||||| |||||||||||||| Sbjct 831815 GCCGGCATTGAAGAGCGTGGG 831795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107105635544653