Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 170 3e-36 seq15 114 2e-19 seq8 114 2e-19 >seq4 Length=3324183 Score = 170 bits (188), Expect = 3e-36 Identities = 240/330 (73%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCT-AAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 ||| ||||| ||| ||| | |||||| |||| |||| ||||||||||| || ||| Sbjct 1758204 ACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGA--CCGGGCATGAGACCACGC 1758261 Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 ||||||||||| ||||| | ||| || ||| ||||| ||||| ||||| || Sbjct 1758262 TTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGGCAGCG 1758321 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCC 794517 ||| | ||||| |||| |||||| | | | ||| | | |||||| || ||| Sbjct 1758322 AAGGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGCC 1758378 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 794576 || || ||||| || | | |||| | ||||| |||||| ||||||| ||| | Sbjct 1758379 CAGTCAGCCTTCTTTCGGATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTAGGTTCG- 1758437 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | | || ||||||| |||||||||||||||||| ||||||||||| ||||| ||||| Sbjct 1758438 CTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTT 1758497 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || |||||||||||| || ||||| Sbjct 1758498 CTCCATCATGATCTGGAAGCCGTAGAAGCA 1758527 Score = 118 bits (130), Expect = 2e-20 Identities = 178/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 1757883 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAG 1757942 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--G 794009 ||||| |||||| | ||| ||||||| | | |||| ||||||| || | Sbjct 1757943 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAG 1758002 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| |||| || || || |||||||| ||||||||||| ||||||| | | |||| Sbjct 1758003 AGCGA--CAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTC 1758060 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| ||| || ||| || | ||| ||| ||||| | ||| || |||||| Sbjct 1758061 ATGCCGAGGAGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCA 1758120 Query 794130 TCGATGATGAT 794140 || | ||||| Sbjct 1758121 TCAGTAATGAT 1758131 >seq15 Length=1128247 Score = 114 bits (126), Expect = 2e-19 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||||||||| || || |||| ||| ||||| || ||||| || |||| || || Sbjct 832055 GCCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATT 831996 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || |||||||| || || | ||| | ||| | || || | |||| | | Sbjct 831995 CGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACATTCAG 831936 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || || || || ||| ||||||||| | || || | || || || |||||||| || Sbjct 831935 ACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCC 831876 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| || ||| ||||||| || | || ||||| || || ||| || | | || Sbjct 831875 CTCAATACTGTCATCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGT 831816 Query 2073777 GCCGGCATTGAAGAGCGTGGG 2073797 ||||||||||||||||||||| Sbjct 831815 GCCGGCATTGAAGAGCGTGGG 831795 Score = 89.7 bits (98), Expect = 8e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||| || ||||||||||||||||| |||||||||||| |||| || || || | | Sbjct 57476 GTACTTAGTCACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCAGGAAG 57417 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || | |||||||||||| |||| Sbjct 57416 GATGAGACGGACAGAGGTCTGGATCTCTCGGG 57385 >seq8 Length=2675190 Score = 114 bits (126), Expect = 2e-19 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||| |||||||||||||| || || ||| | || ||||||||||| |||||| | | Sbjct 2267561 CCAACTATCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACCGTCGCCAACATGA 2267620 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||||||| ||||| || |||||||| || || ||||| Sbjct 2267621 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACAT 2267663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916202892804551