Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 163 9e-35 seq1 156 1e-32 seq4 93.3 1e-13 >seq3 Length=3549891 Score = 163 bits (180), Expect = 9e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | |||||| | || |||||||| || || || || || || || Sbjct 3007139 CATACCACCACGAAGACGTAGAACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTC 3007080 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| |||||||| || ||||||||||| || || || ||||| || Sbjct 3007079 GGAAAGAGTTCGACCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCGGG 3007020 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || || || || || ||| || ||||||||||| | ||| |||| | Sbjct 3007019 AGGAATACCCTCCTTGTCTTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 3006961 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| |||||||| || || || || ||||| || ||||| Sbjct 3006960 CGACTTCCAGAGTAATGGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 3006909 Score = 150 bits (166), Expect = 5e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| ||||| || || ||||| || | Sbjct 3006915 TTTGCATACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGT 3006856 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || ||||| ||||| |||||||||||||| || || ||||| | Sbjct 3006855 AGTCGGCAAGAGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGT 3006796 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| || || || |||||||| || | || ||||| || || | ||| |||| Sbjct 3006795 CAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCGGATG 3006736 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || ||||| || | ||||| || || || || || || Sbjct 3006735 ACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 3006693 Score = 138 bits (152), Expect = 3e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| || | || ||||| || |||||||| ||||| || || || || || || Sbjct 3007363 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 3007304 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || |||||||| || || || ||||| ||||| ||||| ||||||||||| || Sbjct 3007303 AAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGG 3007244 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGG-TTCAA 140688 || || || ||||||||||| || ||| || || || || || | || | ||| ||| | Sbjct 3007243 ATACCCTCCTTATCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGTC-GCTGGATTCGA 3007186 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| |||| ||||| || || || || || || ||||||||||| Sbjct 3007185 CCTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTCACGAAAATCTGCAT 3007137 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | ||||||||||||||||| ||||| || ||||| || | Sbjct 3006633 TTTGCATGCCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGT 3006574 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| || || || || || || | |||||||| | Sbjct 3006573 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 3006514 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || || || || || | || |||| Sbjct 3006513 CGGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGATG 3006454 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || || || |||||||| Sbjct 3006453 ACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 3006399 >seq1 Length=5319023 Score = 156 bits (172), Expect = 1e-32 Identities = 443/674 (66%), Gaps = 10/674 (1%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 983925 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 983984 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || || | ||| || || | || || Sbjct 983985 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCTATGAACCCTCAGAACACT 984044 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || || || |||||| | || ||| | | || | ||| || | ||| Sbjct 984045 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGACCCTGAGGTTCAGGCCGAT 984104 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || || | | ||| | ||| |||| || || | || ||||| Sbjct 984105 ATGAAGCACTTCCCCTTCAAGATCGTTG-ACAAG--GGTGGCAAGCCCAACATCGAGGTC 984161 Query 349502 GAATATAAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCATCAATGGTTTTA 349558 || | || || || || || || || |||| || || || || | ||| | || Sbjct 984162 GAGTTCAAGGGCGAGACCAAGACC---TTCACCCCTGAGGAGATCTCTGCTATGATCCTA 984218 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || ||| || | ||||| | || | || || || || | | || |||||| Sbjct 984219 ACCAAGATGCGTGAGACCGCTGAGTCTTACCTCGGCGAGACTGTCAACAACGCCGTTATT 984278 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || ||| | |||||| || || || ||||| || ||| Sbjct 984279 ACTGTCCCTGCCTACTTCAACGATTCTCAGCGTCAAGCCACCAAGGATGCCGGTCTCATC 984338 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | || ||||| |||| || || || || |||||||| || ||||| || || Sbjct 984339 GCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 984398 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||| || | | ||| || || | || || || ||| | ||||| |||||| Sbjct 984399 CTTGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTGATCTTCGATCTTGGTGGCGGTACT 984458 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || | ||||| ||| Sbjct 984459 TTCGATGTGTCTCTCCTTACTATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGGT 984518 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || || || ||||| || || || || || ||||| || || || || || || Sbjct 984519 GACACTCACCTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTAAACGAG 984578 Query 349919 TTTAAGCGTCAAGC 349932 || ||||| ||||| Sbjct 984579 TTCAAGCG-CAAGC 984591 Score = 107 bits (118), Expect = 6e-18 Identities = 190/276 (69%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| ||||||||| |||| ||| || || || Sbjct 851329 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATATAACCTGTTTCGGCAGTCTTGACCGC 851270 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| || || | ||||| || Sbjct 851269 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGCTGGGAGTGAG 851210 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || |||| | ||| || | || | || || | ||| | || || Sbjct 851209 ACCACGGAGGTAAGAGTTCTCGACAAAGCCACGGGCTTCAGGTGAGTAATCGTCCTTGGT 851150 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 | ||||||||||| |||| || || || | ||||| || || || || ||| | || Sbjct 851149 GAAGTGAGGTAATGTGCGATACTTGAAACCGAACGGAATACGCTTGCCTTCGACAATTTG 851090 Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 |||| |||| |||| |||||||| |||||| Sbjct 851089 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 851057 Score = 107 bits (118), Expect = 6e-18 Identities = 104/133 (78%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | ||||| ||| || || | |||||||| || ||||| || || Sbjct 852090 CGCGGCACACCAAGAGTAACGTTC---TTGGACGACACACCAGCGAAATGGAAGGTGTTC 852034 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| ||||||||||| |||||||| || | ||| ||||||||||| Sbjct 852033 AGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 851974 Query 377578 CCAGGATTGACAA 377590 ||||| ||||||| Sbjct 851973 CCAGGGTTGACAA 851961 >seq4 Length=3324183 Score = 93.3 bits (102), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || || || || || ||||| || || || || || || Sbjct 2716474 CATACCACCGCGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 2716533 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||| ||||| || || ||||| || || Sbjct 2716534 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGG 2716593 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 2716594 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 2716653 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 2716654 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 2716704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515246459593427