Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15 230 3e-55 seq5 102 9e-17 seq4 100 3e-16 >seq15 Length=1128247 Score = 230 bits (254), Expect = 3e-55 Identities = 524/778 (67%), Gaps = 28/778 (4%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | |||||| ||||| || | ||| ||| Sbjct 831687 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 831746 Query 53240 CGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296 ||||| ||| | | ||| ||| |||| ||| ||||| || | || || || Sbjct 831747 TTGGAGACATACAATCTGATGTCTAGC---AAGTTCTTCACGCATGCTTCCCCCACGCTC 831803 Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356 ||||| || || || ||| || || |||| |||||| |||| | ||||||||| Sbjct 831804 TTCAATGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAT 831863 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 ||| || || || |||||||| || |||||| |||||| ||||||||| | | Sbjct 831864 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 831923 Query 53417 GGTGGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 |||||||| ||| | | ||| | | | ||||||| | ||| || ||| || | Sbjct 831924 GGTGGTATTGGTCTGAATGTGCACCGTA--TCCGTGCTACTGGCTCATACATCGCCGGTA 831981 Query 53475 CGAACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 | ||||| | ||| |||| | || |||||||| || |||||||||||||| || || Sbjct 831982 CCAACGGTACATCGA--ATGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCG 832039 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592 ||| ||| ||||||| || ||||| || | || ||||||||||||||||| || Sbjct 832040 GTATGTCGACCAGGGCGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTG 832099 Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 |||| | || | | ||||| || || || ||| ||| || ||| | || ||| | || Sbjct 832100 GCACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAGGAGGAGGTCCG 832159 Query 53653 CTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 ||||||||| || || || ||||| || || || |||||| | || || || Sbjct 832160 TGCCCGTGACCTTTTCCTTGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAA 832219 Query 53713 GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACG 53771 | ||| || ||| ||||||||||| || |||||||| |||||| | | || ||||| Sbjct 832220 GAACGGTGACTGGACACTGATGTGCCCCAATGAGTGCCCTGGCCTCGCCGACTG-CTACG 832278 Query 53772 GTGAGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGA 53825 | |||||||| | | |||| | |||| | || | |||| ||| | Sbjct 832279 GAGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------A 832332 Query 53826 AGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAA 53885 ||| | ||||| | || | ||| | || || || || |||| ||||| |||| Sbjct 832333 AGACCATTAAGGCTCAGAAGCTCTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAA 832392 Query 53886 CGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || | |||| |||||||||| | |||| ||||||||||| |||||| |||| Sbjct 832393 ACCCATTCATGCTCTACAAGGATGCTTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 832450 >seq5 Length=3271200 Score = 102 bits (112), Expect = 9e-17 Identities = 288/436 (66%), Gaps = 11/436 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| ||||| || |||||||||||||||| ||| || | || || || || | | Sbjct 313527 CCTGTACCAATGCCATCGGCACCGTTGACCAGAACCATGGGGAGGATCGGAGCATACACC 313586 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG--TCAGCC- 151992 ||||| | | | ||||| || || | | | || | | ||| ||| || Sbjct 313587 ATTGGCTCGATTTTCTTGCCGTCTTC-ATAATGA--TGCATCAAGT--TTGGCTCATCCA 313641 Query 151993 --GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGG 152050 || | ||| ||| || | | ||| || ||| |||||| |||| || | |||| Sbjct 313642 TGGGGTGGAAGATCTTGCGGGCGAATGGAGACAGACGAGTGAAGGTGTAACGAGGACTGG 313701 Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110 | ||||| ||||| || || || | || || | |||| ||| || || ||||| Sbjct 313702 CAGCATCAGATCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGTTCCAGACAGTTGA 313761 Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170 |||||| | || ||||| ||||| |||| | || || || ||| | | Sbjct 313762 TGTTGTTTGAACCGACGAAGTTCTGGGCCAGGCCAATGATAGTCTGTTGGAGAGACTGCT 313821 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 ||||||||||||| || |||||||| | || || || ||||| | | |||||| ||| Sbjct 313822 CACCGTGGTGATAGGCAGTCTGCTCAGAGACATAACCAGCCAATTCAACGACCTTCTTGT 313881 Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 | | ||||| |||||| ||||| || || ||||| ||||| || || || | Sbjct 313882 CTTTGACAAGGTTTCTCTTGAAGCAGGCATATATGACCTTTCGCTGACCCGGCTTGAAGC 313941 Query 152291 CGTCCACCACGTGAGG 152306 | |||| |||| |||| Sbjct 313942 CATCCAGCACG-GAGG 313956 >seq4 Length=3324183 Score = 100 bits (110), Expect = 3e-16 Identities = 528/820 (64%), Gaps = 46/820 (6%) Strand=Plus/Plus Query 74472 ACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAA 74531 || ||||| || || ||||||||||| || | | |||||||||||||| ||||||| Sbjct 1757908 ACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAG 1757967 Query 74532 GGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCCATG-AGGCGATCCGCC 74588 ||||| | || ||| | |||||| | || | | || | || ||||| || Sbjct 1757968 GGGTTGGTGGCCTTGTAGAC---CTTCTCGTTGCCAAGAGCGACAAGGAGACGATCAGCG 1758024 Query 74589 ACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGT 74648 || || | |||||||||| |||| | | | |||||||| ||| || || || Sbjct 1758025 ACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGGGCACAGGGAAGA 1758084 Query 74649 GCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCTTGTGAATG- 74705 ||||| |||| ||||| ||| | | | | ||| | | || | ||||| Sbjct 1758085 GCCTCAGTGAGGAACTCCTGCTCAA--TGGTGACGGCATCAGTAATGATATCCTGAATCA 1758142 Query 74706 TCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGA 74762 ||| ||| ||||| || | |||||||||| || | || |||||| || Sbjct 1758143 TCTGCTTGCT--GGCACGAC-CCTTGAGGTGAGAGTGGAGGAGGCA-GGCAAAGTCAGTG 1758198 Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 || || || || | || | || || || || | || || ||||| || ||| Sbjct 1758199 TGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCGGGCATGAGACCA 1758258 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 |||||||| | ||| ||||| | ||||| ||||||||||||||| || || || Sbjct 1758259 CGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACGGCA 1758318 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC---ATCCAAGTCTGA--G 74937 || ||||| || || || || || || | | || | | ||||| || || | Sbjct 1758319 GCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCA--TCGGATGG 1758376 Query 74938 CCCATTCAGCTTTTCGTTTGACCGCAGGGAC-AGTATCGATCGCTTGGAAGAGGCTTGCC 74996 |||| ||||| || | || | ||||||| ||| || || || | ||||||| | Sbjct 1758377 CCCAGTCAGCCTT-CTTTCGGATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTAGG-- 1758433 Query 74997 TTCTCTT--CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAA 75054 ||| || |||| ||||||| | |||| || | || ||||| ||||| || |||| Sbjct 1758434 TTCGCTGGGCGGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAA 1758493 Query 75055 TCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATC-- 75112 | ||| | | |||| | ||||||| | || ||||| | ||||| || || Sbjct 1758494 TGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGC 1758553 Query 75113 CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGC 75172 | ||||| || | ||| ||||| |||| ||||| || ||||| ||||| ||||| Sbjct 1758554 CACTGAAACGCTC--GACGAGGTTCTCGTTGACAATGCCATCTGAGGCAGCGAAGAAAGC 1758611 Query 75173 CAGTACCATTTTGATA----AAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATCCT 75225 || | | ||| | ||| |||| || |||| || |||| ||| || | Sbjct 1758612 AAGGA----TATGAGAGACGAAGAACTGCTCGTCAGCAGTCAGGCGGTTGTTCCAGTCGT 1758667 Query 75226 TCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 || ||| | | |||||||||||| | |||||||| Sbjct 1758668 GGAGATCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAA 1758707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213202358200