Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 >seq3 Length=3549891 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || || || | || Sbjct 3006398 CATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCATC 3006457 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| || ||||| ||||| || || || || ||||| || Sbjct 3006458 CGACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCCCCCGACCA 3006517 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | ||||||||| || | || ||| | || | || |||||||| Sbjct 3006518 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 3006577 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || | ||| | ||| | || | || |||||||| Sbjct 3006578 CATTCAGAAGGAGTCCACTCTTCATCTTGTTCTCCGCCTCCGTGGTGGCAT 3006628 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| | |||||||| ||||| || | ||| Sbjct 3006909 ATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 3006968 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || |||||||| || || || || ||||||||| Sbjct 3006969 GATACCATTGATAATGTGAAGAGCAAGATCCAAGACAAGGAGGGTATTCCTCCCGATCAA 3007028 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| ||| | || || || || ||||||| |||||| Sbjct 3007029 CAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGATGGTCGAACTCTTTCCGACTACAAC 3007088 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | || |||||| | ||| | || ||||| || Sbjct 3007089 ATCCAGAAGGAATCTACTCTCCACTTGGTTCTACGTCTTCGTGGTGGTAT 3007138 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | ||||||||||| || ||| | | Sbjct 3007137 ATGCAGATTTTCGTGAAGACTCTCACTGGCAAGACCATTACTCTTGAGGTCGAATCCAGC 3007196 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| || || || || || || || ||||| Sbjct 3007197 GACACTATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAG 3007256 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || ||||||| || ||| | ||| |||||| Sbjct 3007257 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTGAGCGACTACAAC 3007316 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | || | ||| | || | || |||||| Sbjct 3007317 ATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGTGGC 3007364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916176479680