Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20nygamai_20[genbank_20GCA_5F001262555.1_202015-08-06] 409 sequences; 51,615,029 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3 132 3e-26 seq4 125 5e-24 seq7 100 2e-16 >seq3 Length=3549891 Score = 132 bits (146), Expect = 3e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || |||||||| || |||||| ||||||||||| ||| | || || || | || || Sbjct 3007345 ACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG-CGACCATCTTC 3007287 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || || ||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 3007286 CAGCTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTG 3007227 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || |||||| |||||| ||||| | ||||| ||||| Sbjct 3007226 AATCTTGCTCTTCACGTTGTCGATAGTGTCGCTGGATTCGACCTCAAGAGTAATGGTCTT 3007167 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||||||||| || ||||| Sbjct 3007166 GCCAGTGAGAGTCTTCACGAAAATCTGCAT 3007137 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||| || ||||||||||| | ||| ||| |||| || Sbjct 3006607 ACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCA 3006548 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || ||||| || ||||| || | || | ||| ||||| ||| Sbjct 3006547 AGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGA 3006488 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||||| || || ||||| | || || ||||| Sbjct 3006487 ATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTG 3006428 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || |||||||| |||||||| ||||||||| Sbjct 3006427 CCGGTCAGGGTCTTGACGAAGATCTGCATGATG 3006395 Score = 114 bits (126), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 |||| ||| || || ||||| ||||||||||| |||| ||||| || | || | Sbjct 3007117 ACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTT--CGACCATCCT 3007060 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || |||||||| | ||||| ||||| | ||| | ||| ||||| || Sbjct 3007059 CAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTT 3007000 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | ||||| |||| || || || |||| ||||| |||| Sbjct 3006999 GGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCT 3006940 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || |||||||| || ||||||||||| Sbjct 3006939 TTCCAGTAAGGGTCTTGACAAAGATTTGCAT 3006909 Score = 113 bits (124), Expect = 3e-20 Identities = 150/203 (74%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || || ||||| || ||||| || |||||||| ||||| ||||| | || |||| | Sbjct 3006889 ACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGAGTTCG-GC-CGTCTT 3006832 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || |||||||||| |||||||| || | ||| | ||| ||||| ||| Sbjct 3006831 CGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCT 3006772 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 |||||| ||| || ||| | ||||| |||| || || ||||| | || || || Sbjct 3006771 GAATCTTCGACTTAACATTGT--CGATGGTATCGGATGACTCGACCTCAAGGGTGATGGT 3006714 Query 44305 CTTTCCCGTGAGGGTCTTCACGA 44327 ||| || ||||||||||| |||| Sbjct 3006713 CTTGCCAGTGAGGGTCTTGACGA 3006691 >seq4 Length=3324183 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| ||| || ||| | || || Sbjct 2716496 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 2716555 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | |||||||| || | || | || ||||| ||| Sbjct 2716556 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 2716615 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || |||||||| Sbjct 2716616 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 2716675 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| ||||| || ||||| Sbjct 2716676 CCCGTGAGGGTCTTGACGAAAATCTGCAT 2716704 >seq7 Length=2761656 Score = 100 bits (110), Expect = 2e-16 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || || |||||||| || || |||| Sbjct 1020316 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 1020257 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||| || || | || | || ||||| ||| ||||| ||| || ||| Sbjct 1020256 TCAGTCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1020197 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | || || ||||| ||||| ||||||||||| Sbjct 1020196 --CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1020139 Query 44326 GAA 44328 ||| Sbjct 1020138 GAA 1020136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988605560353